Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 464 / 1e-159 ATPME3 pectin methylesterase 3 (.1) AT1G53830 458 / 3e-157 ATPME2 pectin methylesterase 2 (.1) AT3G43270 244 / 3e-75 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 244 / 2e-74 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT4G02320 239 / 4e-73 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 240 / 7e-73 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 229 / 2e-69 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 229 / 6e-69 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 228 / 3e-67 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 222 / 4e-66 ATPME1 pectin methylesterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003933 [exp] 622 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 459 / 3e-158 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 382 / 6e-128 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10001466 [exp] 271 / 5e-86 AT4G02300 299 / 1e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10022412 [exp] 250 / 1e-74 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 238 / 7e-72 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 230 / 2e-69 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 228 / 9e-69 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 224 / 4e-68 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 506 / 2e-176 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 499 / 9e-174 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 438 / 8e-150 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 336 / 1e-109 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 333 / 3e-108 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 322 / 1e-104 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 319 / 2e-103 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 314 / 2e-101 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 299 / 1e-95 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G256600 [exp] 285 / 1e-90 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037458 pacid=23167158 polypeptide=Lus10037458 locus=Lus10037458.g ID=Lus10037458.BGIv1.0 annot-version=v1.0 ATGATGAACTACCAACACGAATCAATATCGCCAACATGGGTAATGACCCTTTTACCCCTACTCCTAATCGCGGCGGCAGCCACCGCCGCCGACGAGCCAG CTAGATACTACAACCAATACCATCTCCCACCCACATCAACAATCCCAACAACCGCCGCCACCCCTCACCACGCGCTCCTCCGTTCAGCCTGCAGCACCAC CCGCTACCCGGACCTCTGCTTCTCCGCCGTCGCCACCATTCCGGGCGCCGCCGAATCCCTCACCACCCAAAAAGACGTCATAGAGGCGTCCATCAACCTC ACCTGCTCCGCCGTACAGCGCAACTTCTTCACCGTCGAGAAGCTCATCAAGCGTCCCCGGCGGCTGAAGAAACGGGAGGTGACGGCGCTCCACGACTGCC TGGAGACGATCGACGAGACCCTTGACGAGCTCCACGTGGCGCTTCAGGATCTGAACGAATACCCGAACAAGAAGTCGCTGACCCAGCACGCAGCCGATTT GAAGACATTGCTCAGCGCCGCCATGACCAACCAGGAGACCTGCCTCGACGGGTTTTCACACGACGGCGCTGACAAACGCGTGAGGGCTGCTCTGCTTCAG GGGCAGACGCACGTGGAGCACATGTGCAGCAACTCCCTCGCCATGATTATCAATATGACCGACTCCGACATCCGAAACGACCAGCGGCTCAACCAGATCC ATGACAGACAGGCGATGGAATATCCGCCTCTCTCTAGGGAGGAGGCGGAGGCGGCGGAGAGGTGGCCGGAGTGGGTGTCGGCGGGGGACAGGAGGCTGCT GCAGGCGGCGGAGGAGGAGGTGAAGCCGAACGTGGTGGTGGCGGCGGACGGGAGCGGGGACTACACGACGGTGGAGGAGGCGGTGGCGGCGGCGCCGAAC AAGAGCAAGGAGAGGTTCGTAATAAAGATAAAGGCGGGAGTGTACAGGGAGAATGTGGAGGTAACGAAGTCGAAGACCAACTTAATGTTCTTGGGAGACG GAAGAGCTACCACCATCATCACCGCTAGTAGAAACGTCGCCGATGGGTTCACCACTTTCAAATCTGCCACCGTCGCGGTGGTGGGCCAGGGATTCCTAGC GCGGGACATAACATTCCAAAACACGGCGGGGCCGGAGAAGCACCAAGCCGTGGCACTCCGAGTGGGCGCTGACCTGGCAGCTTTCTACAACTGCGACATC CTAGGGTACCAAGACACCCTCTACGTCCACTCCAACCGCCAGTTCTTCATCAACTGCCTCAACCCCGGCACCGGCGGCGTAAAAAAAGAAAGCCGCCGTC GTCATCCAGGACTGCGACATCCACGCCCGCCTTCCCGGTCCGGGCCAGAAGAACATGATCACCGCCCAGGGTAG
AA sequence Show only first row Show all	>Lus10037458 pacid=23167158 polypeptide=Lus10037458 locus=Lus10037458.g ID=Lus10037458.BGIv1.0 annot-version=v1.0 MMNYQHESISPTWVMTLLPLLLIAAAATAADEPARYYNQYHLPPTSTIPTTAATPHHALLRSACSTTRYPDLCFSAVATIPGAAESLTTQKDVIEASINL TCSAVQRNFFTVEKLIKRPRRLKKREVTALHDCLETIDETLDELHVALQDLNEYPNKKSLTQHAADLKTLLSAAMTNQETCLDGFSHDGADKRVRAALLQ GQTHVEHMCSNSLAMIINMTDSDIRNDQRLNQIHDRQAMEYPPLSREEAEAAERWPEWVSAGDRRLLQAAEEEVKPNVVVAADGSGDYTTVEEAVAAAPN KSKERFVIKIKAGVYRENVEVTKSKTNLMFLGDGRATTIITASRNVADGFTTFKSATVAVVGQGFLARDITFQNTAGPEKHQAVALRVGADLAAFYNCDI LGYQDTLYVHSNRQFFINCLNPGTGGVKKESRRRHPGLRHPRPPSRSGPEEHDHRPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	1.4	0.8735
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	4.9	0.8821
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10034639 [exp]	10.1	0.8308
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	10.8	0.8657
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	13.7	0.8512
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	14.0	0.8733
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	14.1	0.8629
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	17.1	0.8565
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	24.9	0.8226
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	26.4	0.8243

Compare expression of checked genes

Lus10037458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.