Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17280 369 / 2e-127 UBC34 ubiquitin-conjugating enzyme 34 (.1.2) AT5G50430 368 / 4e-127 UBC33 ubiquitin-conjugating enzyme 33 (.1.2.3) AT3G17000 125 / 1e-32 UBC32 ubiquitin-conjugating enzyme 32 (.1) AT1G53830 115 / 2e-27 ATPME2 pectin methylesterase 2 (.1) AT3G14310 104 / 9e-24 ATPME3 pectin methylesterase 3 (.1) AT2G45220 94 / 3e-20 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 92 / 7e-20 ATPMEPCRA methylesterase PCR A (.1) AT1G11590 92 / 7e-20 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 89 / 8e-20 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT3G27980 89 / 6e-19 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003932 [exp] 461 / 2e-163 AT5G50430 368 / 2e-130 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10003933 [exp] 164 / 2e-44 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10016898 [exp] 129 / 7e-34 AT3G17000 397 / 6e-140 ubiquitin-conjugating enzyme 32 (.1) Lus10037759 [exp] 127 / 7e-33 AT3G17000 397 / 1e-139 ubiquitin-conjugating enzyme 32 (.1) Lus10039314 [exp] 117 / 4e-28 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10001467 [exp] 95 / 1e-23 AT4G02320 124 / 5e-35 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 102 / 4e-23 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10027202 [exp] 99 / 5e-22 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 97 / 2e-21 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162200 [exp] 375 / 8e-130 AT1G17280 371 / 9e-132 ubiquitin-conjugating enzyme 34 (.1.2) Potri.003G073100 [exp] 162 / 2e-48 AT1G17280 172 / 3e-55 ubiquitin-conjugating enzyme 34 (.1.2) Potri.010G143900 [exp] 128 / 2e-33 AT3G17000 386 / 1e-135 ubiquitin-conjugating enzyme 32 (.1) Potri.008G106300 [exp] 127 / 3e-33 AT3G17000 380 / 7e-133 ubiquitin-conjugating enzyme 32 (.1) Potri.001G162400 [exp] 123 / 4e-30 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G072800 [exp] 117 / 3e-28 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 114 / 4e-27 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 114 / 5e-27 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 111 / 3e-26 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 111 / 3e-26 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10037459 pacid=23167291 polypeptide=Lus10037459 locus=Lus10037459.g ID=Lus10037459.BGIv1.0 annot-version=v1.0 ATGCAGTCGTCGATAAGCGACGTGGTCCACTCGTCCGGGTGGCACGAGTGGAATGGCGAGTTCGCGCTAGCCACGCTGTTCTACAGGGAGTTTGAGAACC GCGGGCCCGGGGCGAACACGTCGGACAGGGTGAGGTGGGAAGGGTATAAGGTGATGAGTAATGAGACGGAGGCGGTTGTGTTTACGCCGGATAATTTCAT TGCCGGTGGGTCCTGGCTCCGACCGACCAGATTCCCTTTCTCTCTTGCCCAATCGACACCGACGAAACTCGGGGCCCAACCGAGTCAAATCAAACCAAAG CAGAAAAACTGGACGAAACCCGACCCGGCCCTCCCCAACAAGCACAGAAACGGAGGAACGAGGGGTAAAGGAAAAGAAGGGACTAGAGATACGATTCATA CGAAAACTGAAAGGGCTCTGATCGGAGCAGTAGGGTCGCGTAAAGGTCAGGAATCGGATCAGTCACCGGCTAATGCTAATCGGCGGTACAAAATCATCCG CGCTTCTCTAGGATTACGACCAAGGAAGCATACAATCAGGCGGATTCAGGCCGGTCTGCGATCGAGGTGCTCCAGTTTTCTTAGCGCCAAGCCAATAGGG AAGGCAAGAAGAGGTACTGATCCAGCTCCACAGAAGAAAAGTCATCAAATGGCGGAAAAAGCTTGCGTGAAGCGACTTCAGAAGGAATATAGGGCGCTGT GTAAAGAACCAGTCTCCAATGTGGTGGCTCGTCCTTCCCCGAGTAACATTCTCGAATGGCATTACGTACTGGAGGGAAGTGAAGGTACGCCTTTTGCAGG GGGATACTACTACGGGAAGATCAAGTTCCCTCCTGAGTATCCATATAAACCTCCTGGAATTACTATGATCACTCCGAACGGACGATTCATGACTCAGAAG AAAATCTGCCTGTCAATGAGTGACTTTCATCCAGAAAGTTGGAATCCTATGTGGTCCGTGTCAAGCATTCTCACGGGACTGCTTTCTTTCATGATGGATA ACAGCCCCACAACAGGAAGTGTTAATAGCACCATTGAAGAGAAACAACGTCTTGCGGCAGCCTCTCTTGCTTTCAATTGCAAGAACCCGGCGTTTCGGAA GTTATTTCCGGAGTACGTTGAAAAGCTCAACCTAGTGCAGCAGCAGCAGTCTGGCCAGCTGGTTTCAGATGCTCCACAAGAGATCACACAAGCTGAGAAC TCTCGGCCCACGCCAGAAAAGGCCGACGGCCTTCTGGAAGAGGCAGGAAAGGTAGTCGATCCAGCAGCGAAGGATGCAAGGAGAAACAAAAAGCAGGCGT TTCCGACTTGGGTAATGTTGTTGCTCGTCTCGATCTTTGGGATTGTAATGGCTTTGCCTCTGCTTCAGCTTTCGCAATCCTAG
AA sequence Show only first row Show all	>Lus10037459 pacid=23167291 polypeptide=Lus10037459 locus=Lus10037459.g ID=Lus10037459.BGIv1.0 annot-version=v1.0 MQSSISDVVHSSGWHEWNGEFALATLFYREFENRGPGANTSDRVRWEGYKVMSNETEAVVFTPDNFIAGGSWLRPTRFPFSLAQSTPTKLGAQPSQIKPK QKNWTKPDPALPNKHRNGGTRGKGKEGTRDTIHTKTERALIGAVGSRKGQESDQSPANANRRYKIIRASLGLRPRKHTIRRIQAGLRSRCSSFLSAKPIG KARRGTDPAPQKKSHQMAEKACVKRLQKEYRALCKEPVSNVVARPSPSNILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGITMITPNGRFMTQK KICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNSTIEEKQRLAAASLAFNCKNPAFRKLFPEYVEKLNLVQQQQSGQLVSDAPQEITQAEN SRPTPEKADGLLEEAGKVVDPAAKDARRNKKQAFPTWVMLLLVSIFGIVMALPLLQLSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	1.0	0.9116
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10037699 [exp]	2.8	0.9041
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	4.5	0.8961
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	4.5	0.8777
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	6.2	0.9002
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10022253 [exp]	12.4	0.8545
AT5G55060			unknown protein		Lus10021546 [exp]	13.7	0.8852
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10025376 [exp]	16.1	0.8009
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	19.5	0.8497
AT1G04960			Protein of unknown function (D...		Lus10014626 [exp]	19.8	0.8451

Compare expression of checked genes

Lus10037459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.