Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53800 339 / 8e-108 unknown protein AT1G53250 96 / 3e-21 unknown protein AT5G67070 81 / 6e-18 RALFL34 ralf-like 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003930 [exp] 899 / 0 AT1G53800 392 / 2e-130 unknown protein Lus10003931 [exp] 113 / 4e-29 AT5G67070 112 / 6e-33 ralf-like 34 (.1) Lus10028136 [exp] 86 / 1e-17 AT1G53250 139 / 1e-37 unknown protein Lus10042840 [exp] 84 / 1e-16 AT1G53250 144 / 1e-38 unknown protein Lus10001132 [exp] 68 / 1e-13 AT5G67070 100 / 4e-28 ralf-like 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073400 [exp] 419 / 1e-138 AT1G53800 426 / 3e-143 unknown protein Potri.001G161900 [exp] 416 / 2e-137 AT1G53800 433 / 8e-146 unknown protein Potri.005G139100 [exp] 86 / 1e-19 AT5G67070 118 / 4e-35 ralf-like 34 (.1) Potri.001G393700 [exp] 87 / 4e-18 AT1G53250 124 / 5e-32 unknown protein Potri.011G112300 [exp] 87 / 7e-18 AT1G53250 139 / 2e-37 unknown protein Potri.007G044700 [exp] 80 / 2e-17 AT5G67070 119 / 1e-35 ralf-like 34 (.1) Potri.014G026900 [exp] 69 / 5e-14 AT5G67070 94 / 6e-26 ralf-like 34 (.1) Potri.004G044900 [exp] 40 / 0.0006 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G045000 [exp] 40 / 0.0006 AT1G28270 103 / 4e-30 ralf-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10037460 pacid=23167373 polypeptide=Lus10037460 locus=Lus10037460.g ID=Lus10037460.BGIv1.0 annot-version=v1.0 ATGGCGACTCCCAGACTTCTCCTTACTCCGCTGCTGCTCCTTGTCTTGCTGTCTGTCTTAAGCGCCTTATCCTCTACTTCCGCCGCCGAAAGTGCGGCGA GCAGCGGCGGCGGACTGGAGTTCCCGATCGCGATGTCCATGTACGGCGGTGGAGAGCTTGAGGATGAGTTGGAAGAAGCGGAGGAAGACGGAGGAGATGG AAAGAGAAGGGAGCTGTACTGGAGGAGATGGCCGCAGCAGCATTACTACATCTCGTACGGAGCTCTGTCGGCGAACAGAGTCCCTTGCCCGCCCAGATCT GGAAGGTCTTACTACACCAATAACTGCTTCGCGACTCGCACTCCGCTCGTTTCAATTGCATCTCCAGCTACTGACTGCTTGTTTGCTGCTCGAGAACTGT TGAAATTGGATGAGTTACCAGTCCTTAATGATCATAAAGCTGAGTTTCTGGTGGTTCTGCTTGTAGATGTTAAGTGTGCAAAAGTCATGAATCTAATGTT CTGGACAGATATTCCTACTGCTCAGACATCCTTGCGAAATCAACTGCCTCCGAGGGCCCGGATGCTCCCTCCAAATCAGGCCTGCCGAGCCTTCTCAACC CCGTTCACCCGAGCTGATGAAACCGGACTTAACTCAGCCTGGAAGTCTTTACTCCCTCTTGTAAGGTCCCTCACTTGTCGACGGCGTCACTTTTTCATCA GGGCAGTGGCAACAGCGCTGAGTGAAGTAAGACATGGAGATGAGGTGGCTCAATGTGACACACTCCCGGATTTTACTTCGACTCCTTCTACGTCTCACGA TGATAGCGAAGAGTCTGATGAAGTGGACGAGGGTGAGAAGCTGAGACGAATGAGGATCTCGAAAGCGAATTTGGGGAAAGTTCCGTGGAACAAGGGCAGG AGGCATAGTCCTGAAACCATTCAACGGATCAAGGAGAGAACAAGGCTTGCCATGCAGAATCCTAAGATTAAAATGAAGCTCCAAAACCTTGGGCATGCGC AGACCACAGAGACGAGAGTGAAGATTAGTATTGCAGTGCGGGAAGGATGGGAAAAACGCCGTGAGAAGCTGATGTTGCAGGAATATTGTTACTTTGATTG GCAGAACTTGATAGCAGAAGCTTCACGGATTGGCTTAGTTGATGAGGAAGAGCTGGAATGGAACTCGTACAGTATCTTACGTAAAAAGCTTCAAATTGAA TGGGTGGAGAGTGTTGAAATCCGGAGAACAATGCCTAGGCCAAAGGGCAACAAGAGAGCTCCAAAGACCCCTGAGCAAAGAAGAAAAATTGCAGAAGCCA TTGCTGCCAAATGGGCAGATCCTTCATATCGTGAACGAGTCTGCTCTGGTCTTGCTAGACACCATGGAATTACAGAAGGTACCGAGAGAAAGCCAAGGCG AATTAGCAGTGGACCATCCACCAAGAGGAATGTCGAGAAAAGGAAAGCCATTGGGTTGAGCAATTCCTATGGAAGTGATGCCACGAGCCCTGCTCAGGTT CCACGAGTGCGGAAGATTGCAGCACCATCGTACAAGGATCCCATGGCGCGTTCCAAGTTGAGGATGATAATGAAAATCAGAAAACAAAGGGCTTCCGCGG AAACTCAGAAAACTGAAGCAATTGAACGAGCAAGGTTATTCATAGCTGAAGCCGAGAAGGCAGCAAAGTTTCTCGAGGCTGCAGCAGGAAATAGCCCCAT TGCACAAGCTTCTCTGCTAGAGACCAGAAAGCTCATAGATGAAGCAATTGAATCGATCAAATCCATCAACGGAGGGGATATCGAAATCGGAACAACTGAA CCAGCCAACGAGGAGGAGACGACAAACGAGGAAGCAGTAAAAGAAGTAAACGGCACCAAAACGAACGCGATTCGTGCAGAAGAGGACGACCCAATCAACT TCACTAACTTGGCCATCTGCGATAAGTTCGATTTGACGAGTCTCGTAGAGAAGAAACCAGACGACTACAACGGAGAACTGAACGGGTATCTCAAATCCGG ACACAGCATTGTCGAACCAAATGGTTCTGAAGTTGAGTCTGTGAACGAGGAAAAGCCATGTGAGACAGCTAGCGAACCGAGAAAGAGATGGATTCGAGGA AGGCTCGTTGATGTCGAGTCGGAAGGAAGTCAGGATTAG
AA sequence Show only first row Show all	>Lus10037460 pacid=23167373 polypeptide=Lus10037460 locus=Lus10037460.g ID=Lus10037460.BGIv1.0 annot-version=v1.0 MATPRLLLTPLLLLVLLSVLSALSSTSAAESAASSGGGLEFPIAMSMYGGGELEDELEEAEEDGGDGKRRELYWRRWPQQHYYISYGALSANRVPCPPRS GRSYYTNNCFATRTPLVSIASPATDCLFAARELLKLDELPVLNDHKAEFLVVLLVDVKCAKVMNLMFWTDIPTAQTSLRNQLPPRARMLPPNQACRAFST PFTRADETGLNSAWKSLLPLVRSLTCRRRHFFIRAVATALSEVRHGDEVAQCDTLPDFTSTPSTSHDDSEESDEVDEGEKLRRMRISKANLGKVPWNKGR RHSPETIQRIKERTRLAMQNPKIKMKLQNLGHAQTTETRVKISIAVREGWEKRREKLMLQEYCYFDWQNLIAEASRIGLVDEEELEWNSYSILRKKLQIE WVESVEIRRTMPRPKGNKRAPKTPEQRRKIAEAIAAKWADPSYRERVCSGLARHHGITEGTERKPRRISSGPSTKRNVEKRKAIGLSNSYGSDATSPAQV PRVRKIAAPSYKDPMARSKLRMIMKIRKQRASAETQKTEAIERARLFIAEAEKAAKFLEAAAGNSPIAQASLLETRKLIDEAIESIKSINGGDIEIGTTE PANEEETTNEEAVKEVNGTKTNAIRAEEDDPINFTNLAICDKFDLTSLVEKKPDDYNGELNGYLKSGHSIVEPNGSEVESVNEEKPCETASEPRKRWIRG RLVDVESEGSQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53800			unknown protein		Lus10037460 [exp]	0	1
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	4.2	0.8074
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	5.3	0.8449
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	6.2	0.8637
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	8.9	0.7857
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	11.2	0.8257
AT2G22370			unknown protein		Lus10023150 [exp]	13.5	0.7977
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	15.5	0.8010
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	17.5	0.7888
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	17.9	0.8085
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	22.9	0.7946

Compare expression of checked genes

Lus10037460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.