Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50420 657 / 0 O-fucosyltransferase family protein (.1) AT1G17270 650 / 0 O-fucosyltransferase family protein (.1) AT1G53770 615 / 0 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003929 [exp] 935 / 0 AT1G17270 714 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073500 [exp] 679 / 0 AT5G50420 694 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037461 pacid=23167012 polypeptide=Lus10037461 locus=Lus10037461.g ID=Lus10037461.BGIv1.0 annot-version=v1.0 ATGGAGAGAGATTCATCCGATGAGGACGACGATCGAGAGAGCTTCCTAGAGCAGAACGACCGCAAGCATCCTCAGCCTCGCTCGCGGGAACCGTCCACCT CTCCCCGTCCTTCCTCCTTCCACGTCGAGTCCGATCTCCGATCCTACGGCAATGGGTTGGGTCGCCGTTTCTCTAATCTCAGCCTCAAGAGGTACCTCTT CGCCTTCTTCCTCCCTCTCTTCCTTATCCTCCTCTACTTCTCCACCGACTTCCGTAGCCTCTTCTCTTCCAAATTCCCCGTCCTTAACCTCGATCCTCTT TCCGATCGGATGCGTGAGTCCGAGCTGCGAGCTCTCTACCTCCTCCGTCAGCAGCATCTTTCTCTCCTCTCCATCTGGAACCAGTCGTCCTCCTCCTCCG CCGCGAATTTGAGCTCTACTGATGCTGCTCCGGCTCTCGATTCCATCCAATCTGCATTGTTGCCGTTGATTTCGCTCAACAAACAAATTGAGCAAGCTCT GCTCTCCCCTCATAACTCGTCCTCGGATTTCAATTCATCAAGTGGCGTTCCTGGTGTCTTCCCGAGCTGTCAGAGCCTCCACCGCCGGCTACCGGATCGT AGAACGATCGACTGGAAGCCTCGGCCGGATAAGTTCTTGTTTGCTATTTGTTTGTCTGGACAGATGAGTAACCACTTGATTTGCTTGGAGAAGCACATGT TCTTTGCGGCTTTGCTCAACCGAGTCCTGGTTTTCCCGAGTTCCAAATTTGATTATCATTACAGCAGAGTCTTGGATATCGACCATATCAACACTTGTTT GGGAAGAAAAGTTGTGCTCACCTTCGAAGAGTTAGTGGAAATGAGGAAGAATAAGCTGCGAATTGATAAGTTCGTATGCTACTTCTCGTCTCCCACGCCC TGTTACGTCGATGAGGACCATGTCAAGAAATTGAAGGGCTTGGGGATCTCTGTAGGGAAGCTCGAGTCCCCTTGGAATGAGGATATCAAGAAGCCTAGTA AAAGGACTACGGAAGAAATTGTGGCTAAGTTCAAGTCTGACGACGATGTTATTGCTATTGGAGATGTGTTCTTTGCCAAAGTTGAGACTGAGTGGCTGAT GCAGCCTGGCGGCCCTCTCGCTCACAAATGCAAGACTTTGATTGAGCCTAGTAAGTTCATTATGCTCACGGCTCAGCGTTTCGTCCAGACTTTCTTGGGG AAGAACTTCGTCGCTCTCCATTTCCGCCGGCATGGCTTTTTGAAGTTTTGCAATGCCAAACAGCCGAGTTGCTTTTACCCCGTTCCTCAAGCTGCCAGCT GCATAGCTCGTGTCAGTGAAAGAGCGAATGCTCCAGTTATCTATCTTTCAACTGATGCAGCAGAAAGTGAGACCGACTTGTTGCAATCACTAGTTGTTGT TAACGGGAAGAGCATACCACTAGTTAAGCGTCCTCCGCTTAATTCAGCTGAAAAGTGGGACGCTTTGTTGTATAGACATCACCTTGAAGATGATCCACAG GTGGAAGCTATGCTGGATAAGACCATATGTGCAATGTCCAGCGTGTTCATCGGATCCTCGGGCTCTACTTTCACAGACGATATCTTACGGCTCCGCAAGG ATTGGGAATCGTCTTCGTCATGTGATGAGTACCTATGCCAGGGCGAGCTTCCCGACTTCATTGCAGAAGATGAATGA
AA sequence Show only first row Show all	>Lus10037461 pacid=23167012 polypeptide=Lus10037461 locus=Lus10037461.g ID=Lus10037461.BGIv1.0 annot-version=v1.0 MERDSSDEDDDRESFLEQNDRKHPQPRSREPSTSPRPSSFHVESDLRSYGNGLGRRFSNLSLKRYLFAFFLPLFLILLYFSTDFRSLFSSKFPVLNLDPL SDRMRESELRALYLLRQQHLSLLSIWNQSSSSSAANLSSTDAAPALDSIQSALLPLISLNKQIEQALLSPHNSSSDFNSSSGVPGVFPSCQSLHRRLPDR RTIDWKPRPDKFLFAICLSGQMSNHLICLEKHMFFAALLNRVLVFPSSKFDYHYSRVLDIDHINTCLGRKVVLTFEELVEMRKNKLRIDKFVCYFSSPTP CYVDEDHVKKLKGLGISVGKLESPWNEDIKKPSKRTTEEIVAKFKSDDDVIAIGDVFFAKVETEWLMQPGGPLAHKCKTLIEPSKFIMLTAQRFVQTFLG KNFVALHFRRHGFLKFCNAKQPSCFYPVPQAASCIARVSERANAPVIYLSTDAAESETDLLQSLVVVNGKSIPLVKRPPLNSAEKWDALLYRHHLEDDPQ VEAMLDKTICAMSSVFIGSSGSTFTDDILRLRKDWESSSSCDEYLCQGELPDFIAEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	0	1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	1.0	0.9752
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	2.8	0.9518
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	4.5	0.9596
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	5.7	0.9602
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	6.3	0.9658
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	7.3	0.9584
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	8.7	0.9466
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	10.4	0.9454
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	13.0	0.9558
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	15.2	0.9259

Compare expression of checked genes

Lus10037461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.