Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53760 284 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003928 [exp] 439 / 2e-157 AT1G53760 323 / 7e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161800 [exp] 280 / 9e-95 AT1G53760 275 / 1e-92 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10173 [flax] [poplar] Mit_KHE1 Mitochondrial K+-H+ exchange-related
Representative CDS sequence Show only first row Show all	>Lus10037462 pacid=23167367 polypeptide=Lus10037462 locus=Lus10037462.g ID=Lus10037462.BGIv1.0 annot-version=v1.0 ATGAGAGCAAGGTTGGTGGTGTTCCCGCTTCGTGGAAGGAACTGGTGCTTCTCCAGATCTCACGATCCTTCCCTTTCTTCTTCCTCCTCCACCGTTCCTT CTACTGTTCGCGATCTCTGGCGCAGCGTCTCATCCTCTAATTCCTCCGCTCCTCAAAATGCTCAGCTCGTCGTCGATTTCGTCGCCAACAAGATGAATCG GGCGTGGCTCGGTCTTGAGAAGTCTCCCGATGGGACTCTCAAGAAGAAGCTCCACGGGTTTGGCGTGAAGCTCTTGGCGCGGGTTAGGCCGTCGGAGATT TTCTTGAAATCCATTTCCAGGGACGTCACCGATGTTGAAATTGTTTACCCTGTCAGTTTAAATGCGCGACTTGTTCGAAGAAGGTTGCGACATATTGCAA TTAGGGGAGTCGCCATCCATAAGAAATACTTCTATGGTTCAGTGACACTACTTCCTCTGACCTCTGCATTTACTGTTTTACCTCTGCCCAATATCCCATT CTTTTGGGTATTGTTTCGTACATATTCTCATTGGCGAGCCATGCAGGGAGGTGAGATTCTCCTGAAACTGGTGTCAGACAGCTCATGTTCTGACGATTCT GATGCTCAGCAAAACGAGAAACAAAGCCAAACTGAGAAGACGAGCAATTCCGAACACAAAGCTCGTTCTACACCAGGTTCCCCATGGGTGCTAAAGCCAT CGAGGGAGCTCGAGGAGATGGTGTGGCCGGAAGCAGAAGACGTTAGCGAAGCTGCCGTGTCGAGCATCTGCAAGAGTTACGGACTAAACTTGAAAGATGT TCTCAAGTTCAAAGACAAGATGTAG
AA sequence Show only first row Show all	>Lus10037462 pacid=23167367 polypeptide=Lus10037462 locus=Lus10037462.g ID=Lus10037462.BGIv1.0 annot-version=v1.0 MRARLVVFPLRGRNWCFSRSHDPSLSSSSSTVPSTVRDLWRSVSSSNSSAPQNAQLVVDFVANKMNRAWLGLEKSPDGTLKKKLHGFGVKLLARVRPSEI FLKSISRDVTDVEIVYPVSLNARLVRRRLRHIAIRGVAIHKKYFYGSVTLLPLTSAFTVLPLPNIPFFWVLFRTYSHWRAMQGGEILLKLVSDSSCSDDS DAQQNEKQSQTEKTSNSEHKARSTPGSPWVLKPSRELEEMVWPEAEDVSEAAVSSICKSYGLNLKDVLKFKDKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53760			unknown protein		Lus10037462 [exp]	0	1
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10005410 [exp]	5.5	0.9108
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	6.0	0.9336
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	13.4	0.9119
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	15.3	0.9215
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	18.2	0.9156
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	18.4	0.9133
AT4G29410			Ribosomal L28e protein family ...		Lus10012914 [exp]	23.0	0.9069
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	23.0	0.8967
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	26.4	0.8898
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Lus10027899 [exp]	26.5	0.8902

Compare expression of checked genes

Lus10037462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.