Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003927 [exp] 416 / 7e-144 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139350 [exp] 633 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01011 [flax] [poplar] PQQ PQQ enzyme repeat
Representative CDS sequence Show only first row Show all	>Lus10037463 pacid=23167289 polypeptide=Lus10037463 locus=Lus10037463.g ID=Lus10037463.BGIv1.0 annot-version=v1.0 ATGCTCATCAACAGCTACACAGTCAAGAACCTGAAACTCAAATGGACATTTTTTGCAGGCAAAGACATATCAGCAACTCCAGCAGTAGCCAACGGAGTCG TCTACTTCCCGTCCTGGAACGGCTACATCTACGCTGTGACGGCGGCTCACGGTAACTTGATATGGAAGCAAGATCTGAACCAGCTGACCGGACTTAACGG CACTGGAGTCGTGGTCAACGTAACGGTGTCAAGATCGACTCCAACGATTGCGGACGATCTCGCCGTGTTTGGGATCTATGGACCTGCTGTTGTGATTGCT CTGAATAGGTGGACTGGCAAGCTTGTTTGGAAAACCATGTTGGATCCCAGGCCTAGAGTGTTGATCACACAGTCTGGAACATATTTCAATGGGGCATTGT ACATCGGTATTTCATCCCTGGAAGAAGGCCTACCAGCAGAACAGTGCTGCACATTTCGCGGCAGGATGACGAAGCTCGACATTCGAACCGGACTCCTCCT GTGGAACACATACACGATCCCCGATAATGGCGGCCAAAAGGAAAGCTATTCAGGAGCTGCAGTTTGGGGCAGCAGCCCTGCAATTGATGTAGTAAGAAGA TTAGTTTACATTGCAACTGGAAACCTTTACACGGTCCCACCTGAAGTGGCAGCCTGCCAGGAAGCGCAAAACAACCAGACTGGACCGAAACCGAACCAAA CGGATCAGTGCATTGCTCCCGACATTCATTACGACTCGATCCTGGCCCTCGAAACCGACACCGGCAGGATCAGATGGGCCAGGCAGCTTGGTGGATATGA TGTTTTCTATTTTGCCTGCTTGGTTCCGAATAATCCTGACTGTCCACCGGGGCCTAACCCCGATGCAGACTTCGGAGAAGCTCCGATGCTGCTCCGGAGT CTAATCAATGGGACAGTTCGAGATATGGTGGTGGCGGTCCAGAAGAGCGGGTTTGCTTGGGCTCTGGACCGCGACGATGGAACAATTGTGTGGTTCAAGG AAGCAGGGCCGGGAGGCGAGGAAGGAGGAGGGCAATGGGGAGCAGCCACAGACGGGAAGAGAGTCTACACAAACATCGCAAACAGCGGTCGGACAAACTT CACCCTAGCACCATCAACAACAGAAACAACCACAGCAGGAGCCTGGGTGGCTCTCGATTCCTGGTCCGGGAAGATTCTATGGTCCACAGCGAACCCCAGC AACGACACTGCCCAAGGGCCCGTCTCGGTTGTCAACGATGTCCTCCTGGCCGGTTCGGTGGCATCCAACGGACCGATATATGCGATGGACACGAAAACCG GGAAGGTGTTGTGGTCTTACAATACTAGTGCCACAGTTTATGGTGGCATATCAGCAAGCTATGGGTGCATCTTCCTTGGGAATGGGTACACTGTTGGGTT GGCTAAGTTCCATACTACGTGGACTCCTGGAACATCACTTTATGCCTTTTGTTTGTCCTGA
AA sequence Show only first row Show all	>Lus10037463 pacid=23167289 polypeptide=Lus10037463 locus=Lus10037463.g ID=Lus10037463.BGIv1.0 annot-version=v1.0 MLINSYTVKNLKLKWTFFAGKDISATPAVANGVVYFPSWNGYIYAVTAAHGNLIWKQDLNQLTGLNGTGVVVNVTVSRSTPTIADDLAVFGIYGPAVVIA LNRWTGKLVWKTMLDPRPRVLITQSGTYFNGALYIGISSLEEGLPAEQCCTFRGRMTKLDIRTGLLLWNTYTIPDNGGQKESYSGAAVWGSSPAIDVVRR LVYIATGNLYTVPPEVAACQEAQNNQTGPKPNQTDQCIAPDIHYDSILALETDTGRIRWARQLGGYDVFYFACLVPNNPDCPPGPNPDADFGEAPMLLRS LINGTVRDMVVAVQKSGFAWALDRDDGTIVWFKEAGPGGEEGGGQWGAATDGKRVYTNIANSGRTNFTLAPSTTETTTAGAWVALDSWSGKILWSTANPS NDTAQGPVSVVNDVLLAGSVASNGPIYAMDTKTGKVLWSYNTSATVYGGISASYGCIFLGNGYTVGLAKFHTTWTPGTSLYAFCLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037463 [exp]	0	1
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	1.7	0.9235
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	2.8	0.9176
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	4.0	0.9131
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	4.2	0.9160
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	4.2	0.8995
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	5.7	0.8919
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	6.5	0.8920
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	7.4	0.8672
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	7.9	0.8838
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	8.1	0.9061

Compare expression of checked genes

Lus10037463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.