Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53730 735 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 719 / 0 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 436 / 3e-146 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G78980 411 / 1e-134 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 367 / 1e-117 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G03390 336 / 7e-105 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 332 / 2e-103 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 311 / 2e-95 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G20530 260 / 2e-80 Protein kinase superfamily protein (.1) AT5G06820 267 / 2e-79 SRF2 STRUBBELIG-receptor family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003926 [exp] 1087 / 0 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 439 / 7e-143 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10033333 [exp] 425 / 9e-140 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10034790 [exp] 414 / 2e-136 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10020030 [exp] 414 / 9e-136 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10035703 [exp] 375 / 7e-116 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039795 [exp] 341 / 4e-107 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 336 / 9e-105 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 332 / 1e-103 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161600 [exp] 844 / 0 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 660 / 0 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 451 / 5e-150 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.011G010500 [exp] 445 / 2e-147 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 445 / 2e-147 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.007G002600 [exp] 440 / 4e-146 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.019G103900 [exp] 349 / 1e-109 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 337 / 3e-105 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 333 / 3e-104 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 330 / 4e-103 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037464 pacid=23167192 polypeptide=Lus10037464 locus=Lus10037464.g ID=Lus10037464.BGIv1.0 annot-version=v1.0 ATGTACAGTTCCTTAAACTCTCCAGGACAGCTGACCGGGTGGAGCTCAAATGGAAACGATCCTTGTAGCCAGAATTGGAGAGGCCTTACATGTTCCGGCT CCCGAGTCACCGAGATAAAATTGCCGAGTTTAGGGCTTTCAGGGACAATGGGGTACAATCTTGACAATCTAAAATCATTGAAGAACCTGAATCTTGCTAA TAATCAATTCACTGGAGAAATACCATATTCGGTTTCTCAGATGACCTCTCTGAAATACTTAAATCTTGCTCATAATCAGCTTCAGAATCAGCTGGGGGAC ATGTTTGGAAAACTCTCTTCTCTGTCCACATTGGATATATCCTCCAACACATTTTCTGGGAACCTGCCTGAAAGTTTTGGCACCCTTCCAAGTATAACAA ATATGGACCTGCAAAACAACCAGTTCACTGGCACCATCGATGTCCTTGCTAGCCTTCGCCTCGAAAATCTGAATATTGCAAACAATCATTTTACCGGCTG GATTCCGCCACAGTTGAGCAACGTCAACATACAAAAGGATGGAAACAACTTTAATGCGGGGCCTGCACCCCCTCCACCACCAGGAACGCCACCTGTCCAC AAAATCCCAAGCAAGTCTGGTGGCAGCGATGGCGGTTCATCCAACAGTGGTGGTAGTTCCGGTGGCAGTGAAAGTAAAAAATCAGGAATAGGGGCTGGTG GTATAGCTGGAATCATCATATCCCTCTTGGTCGTTGGTGCAATAGCTGCCTTCTTCATTATGAGAAAAAGATCCAAGAGATCGTCAACGGATATCGAAAA GCTTGATAATGAGTCCTTCGCTCCTCTTTCTGCTAATAACGTAGACGAAATGAAGTCAATCCACAGTGCTTCCTCAATCAACACGAAAACATTAGATATC CCAGCAGCGATGAGCCTGAAGCCCCCACCGATAGATCGTACGAAGTCATTTGACGAGGATGACTCTTTCAAGAAGCCTGTTGTTGTCAAGAAACGTGTCG CAGCTCCTCCAGTTAGTGTCTCGGCATACTCAGTAGCGGATCTCCAGTTGGCGACTGGTAGCTTCAGTATGGATCATCTTCTTGGTGAGGGGTCTTTTGG GCGTGTCTATCGAGCTCATTTCGATGATGGCAAGGTGCTAGCAGTGAAGAAAATAGATGCAGCTGCTTTATCCAGTAGTGACATGTCCGAAGATTTCGTA GAGGTAGTTTCGAAGATCTCCGACTTGCATCACACCAATGCCTCAGAGTTAGTGGGCTATTGTTCTGAGCATGGTCAACATCTTCTAGTCTATGAGTTCC ACCGAAATGGATCACTACACGACTTCCTGCATCTATCAGACGAATACAGCAAGCCGATGATATGGAATTCACGCGTCAAGATAGCACTTGGGACCGCTCG TGCGTTAGAGTATCTTCATGAAATATGCTCGCCGTCTATAATTCACAAAAACATCAAGTCAGCAAATATACTATTAGACGCTGAACTAAATCCTCACCTT TCAGACTCTGGCTTAGCAAGCTTCCTTCCAAATGCCGATCAGGCATTGAACCAGAATGCAGGTTCCGGATACAGTGCACCCGAGGTTGCTATGTCTGGTC AGTATACTCTCAAGAGCGACGTCTATAGCTTTGGGGTGGTGATGCTGGAACTTCTTACCGGGCGTAAACCATTCGACAGTTCTAGGCCGAGAAATGAGCA ATCTTTGGTACGTTGGGCGACGCCTCAGCTTCACGACATCGATGCACTATCTAAAATGGTTGATCCGGAACTCAAAGGACTCTACCCCGTGAAGTCCCTC TCCCGTTTCGCTGATGTCGTCGCGCTTTGTGTTCAGCCCGAGCCCGAATTCAGGCCACCAATGTCCGAAGTGGTGGAAGCTTTGGTTCGGTTAGTGCAAC GAGCCAACATGAGCAAGCGAACAACCGGGACCGAACAGCCAGCAGCAGCCTCGCAAGCCGAAAACTCAGATTCACAGGATTACATGGCTTAG
AA sequence Show only first row Show all	>Lus10037464 pacid=23167192 polypeptide=Lus10037464 locus=Lus10037464.g ID=Lus10037464.BGIv1.0 annot-version=v1.0 MYSSLNSPGQLTGWSSNGNDPCSQNWRGLTCSGSRVTEIKLPSLGLSGTMGYNLDNLKSLKNLNLANNQFTGEIPYSVSQMTSLKYLNLAHNQLQNQLGD MFGKLSSLSTLDISSNTFSGNLPESFGTLPSITNMDLQNNQFTGTIDVLASLRLENLNIANNHFTGWIPPQLSNVNIQKDGNNFNAGPAPPPPPGTPPVH KIPSKSGGSDGGSSNSGGSSGGSESKKSGIGAGGIAGIIISLLVVGAIAAFFIMRKRSKRSSTDIEKLDNESFAPLSANNVDEMKSIHSASSINTKTLDI PAAMSLKPPPIDRTKSFDEDDSFKKPVVVKKRVAAPPVSVSAYSVADLQLATGSFSMDHLLGEGSFGRVYRAHFDDGKVLAVKKIDAAALSSSDMSEDFV EVVSKISDLHHTNASELVGYCSEHGQHLLVYEFHRNGSLHDFLHLSDEYSKPMIWNSRVKIALGTARALEYLHEICSPSIIHKNIKSANILLDAELNPHL SDSGLASFLPNADQALNQNAGSGYSAPEVAMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRNEQSLVRWATPQLHDIDALSKMVDPELKGLYPVKSL SRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRANMSKRTTGTEQPAAASQAENSDSQDYMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	0	1
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	1.4	0.8740
AT2G40070			unknown protein		Lus10030402 [exp]	6.9	0.8361
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	8.0	0.8426
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	9.8	0.8110
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	18.0	0.7751
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	25.9	0.7881
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	29.1	0.7777
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	29.3	0.8246
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	29.7	0.7892
AT5G41620			unknown protein		Lus10028746 [exp]	32.4	0.7327

Compare expression of checked genes

Lus10037464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.