Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14360 552 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 400 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 381 / 9e-128 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 367 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 330 / 5e-108 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT5G18640 75 / 3e-14 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 71 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G31100 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 50 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 47 / 3e-05 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003925 [exp] 892 / 0 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10005092 [exp] 370 / 2e-123 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 362 / 5e-120 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 352 / 6e-116 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 348 / 2e-114 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 61 / 7e-10 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 51 / 2e-06 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 50 / 4e-06 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 50 / 5e-06 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G073800 [exp] 621 / 0 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 607 / 0 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 402 / 8e-136 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G044500 [exp] 397 / 3e-134 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 392 / 2e-132 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 372 / 2e-124 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 368 / 1e-122 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 65 / 4e-11 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 59 / 5e-09 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 50 / 2e-06 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10037465 pacid=23167095 polypeptide=Lus10037465 locus=Lus10037465.g ID=Lus10037465.BGIv1.0 annot-version=v1.0 ATGGCAGGAACGAGTAACAGTACCAGTAACGGTAGTATAATTGGTACTAGTACCAGTCATATGAAGAGGAGATATGTGGTAGTAAGGCCAGAGAAGGGAT GCATACTCGACTTGATTCGATATGCGCTCTGGGACGAGGATGTAGTTTCGAGCAAGTTTTTGGAGATGAGTTCTCTGCTGCAGATGGATGAGGATGAACG GGTTGATGCTGATGCTGATCATGGGGAGTACAATAAATCTTCGGGGACAATGTCATCGTCACCGTCGTGGGTGATTTTGGTGTCGATCGTTGTCCGGAAG ATCATTTCGAGTTTAGGGAAGCCAATGGATTACAGCGGCTATGTGTTTGAGTTCTTGCTCAATCTCTTGTCTCTCAATGGAAGCCTCTTTGGCTTGCTCC TCAACGTCCTTACCGGGAAGGTAGTGCTGCCAGAAAGAGGGAGTGAGACGTTTATAAGTACCATAGGACATTTGGATGGAAGAATAGACCTTTATAATGG TTGTACTGCTACTGCTGTTCATGATCAAGATTTCACCTTTGAGTCGAACCCGGAAGCATTGATGGATCTGTGTATCATGGCATCGAAATTGGCTTACGAA AATGCGAAAGTCGTCCATTCTGTCGTCTCCCTCCACTGGAAGATGTACTTTGTGGGATTCTTCAACTGCTGGAATGATTTCGAAAAGCAAATGTCAACCC AAGTGTACATACTGAGCGACAAGCCGAAAGATGCAAACTTGATACTGATCAGCTTCAGGGGCACAGAACCTTTCGATGCAGACGACTGGTGCACAGACTT CGACTACTCGTGGTACGAGGTCCCCAAATTCGGGAAGCTCCACATGGGATTTGTCGAAGCACTTGGTCTAGGCAACAGGAACGACATCTCCACTTTCGAC TCGCATCTTCAGCAAACCGAACTGTATCAAGAGAAGAAAAGGGAAGAGGGCGCATACTACCTGGTGAGGGAGAAGCTCAAGAGCTTGCTGGCATCGAATA AGAATGCGAAATTCATCGTGACAGGACACAGCTTAGGGGGTGCACTTGCCATATTGTTCCCAACCGTGCTGGTGTTACACCGGGAGGATGAGACCATGAA GAGGCTGCTGGGAGTGTACACTTTCGGCCAGCCTCGAATTGGGGACGCACAGCTTGGGAAGTATATGGAAGGTCGTCTTGAGCACCCTTCGCCTAAGTAC TTCAGGGTTGTCTACTGCAATGACCTTGTTCCTAGGCTGCCTTACGACGACAAGACTTTCTTGTACAAGCATTTCGGATGGTGCCTCTACTATGATAGCT CCTACATTGAACAAGAAATGCAGGAGGAGCCGAACAAGAATTTCTTCAGTTTGAGGAACGCAGTGGCAGTACATCTGAATGCTGTGTGGGAATTGTTGAG GAGTTTCGTGATTGGATACACCGAAGGTCCGGAATACAAGGAAGGGTGGTTGTCTATGCTGATGAGGATCATGGGAGTCGCACTGCCTGGCATTTCTGCC CACTCCCCTACCGATTATGTCAACTCCGTTCGACTTGGAAGACAAAAGCGTCTTCTTGCTGCTCATCGCTGCTAG
AA sequence Show only first row Show all	>Lus10037465 pacid=23167095 polypeptide=Lus10037465 locus=Lus10037465.g ID=Lus10037465.BGIv1.0 annot-version=v1.0 MAGTSNSTSNGSIIGTSTSHMKRRYVVVRPEKGCILDLIRYALWDEDVVSSKFLEMSSLLQMDEDERVDADADHGEYNKSSGTMSSSPSWVILVSIVVRK IISSLGKPMDYSGYVFEFLLNLLSLNGSLFGLLLNVLTGKVVLPERGSETFISTIGHLDGRIDLYNGCTATAVHDQDFTFESNPEALMDLCIMASKLAYE NAKVVHSVVSLHWKMYFVGFFNCWNDFEKQMSTQVYILSDKPKDANLILISFRGTEPFDADDWCTDFDYSWYEVPKFGKLHMGFVEALGLGNRNDISTFD SHLQQTELYQEKKREEGAYYLVREKLKSLLASNKNAKFIVTGHSLGGALAILFPTVLVLHREDETMKRLLGVYTFGQPRIGDAQLGKYMEGRLEHPSPKY FRVVYCNDLVPRLPYDDKTFLYKHFGWCLYYDSSYIEQEMQEEPNKNFFSLRNAVAVHLNAVWELLRSFVIGYTEGPEYKEGWLSMLMRIMGVALPGISA HSPTDYVNSVRLGRQKRLLAAHRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	0	1
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	1.0	0.9448
					Lus10019815 [exp]	3.2	0.9031
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10038429 [exp]	4.2	0.9086
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	4.7	0.9015
AT5G67265			unknown protein		Lus10042633 [exp]	6.9	0.8906
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	7.0	0.9070
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	7.2	0.9180
AT3G61930			unknown protein		Lus10030203 [exp]	9.4	0.9067
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	9.8	0.9146
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	9.9	0.9164

Compare expression of checked genes

Lus10037465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.