Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17260 1322 / 0 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT3G42640 1248 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1240 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT3G47950 1228 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 1228 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT4G30190 1216 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT1G80660 1209 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 1206 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G24520 1199 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G57350 1199 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001631 [exp] 1249 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1234 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1216 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 1210 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1210 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10019593 [exp] 1152 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10004370 [exp] 1147 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 1146 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1125 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G161400 [exp] 1442 / 0 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.018G090300 [exp] 1255 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1253 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G005900 [exp] 1246 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 1241 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1235 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1231 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1227 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 1224 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1221 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10037466 pacid=23167368 polypeptide=Lus10037466 locus=Lus10037466.g ID=Lus10037466.BGIv1.0 annot-version=v1.0 ATGGCTGACGATATGTTTACGCCATTGTTGGATCCTGAGAATTTCGATCAAGCTTTGGTTGACTTAGAAAGGTTGCCATTAGAGGATGTTTTTGAGCAAC TAAGAACATCATTGGATGGACTTGCATCTGGAGATGCTGAAGCTCGGTTAACGATTTTCGGGCCAAACAAACTCGAAGAGAAGTCGGAGAACAAGTTACT GAAGTTCCTTGGCTTTATGTGGAATCCTTTGTCGTGGGTTATGGAAGCTGCAGCAGTCATGGCGATAGTCCTTGCCTATGGCGGAGGTCAAGGCCCTGAC TGGCAGGACTTTGTGGGGATTGTTTGCCTACTGCTGATAAACTCGACTATAAGTTTCATCGAAGAAAACAACGCTGGAGATGCTGCAGCTGCATTGATGG CTGGTTTGGCACTCAAAACAAAGGTTCTCAGAGACGGAGAGTGGCAGGAGAGGGATGCTGCTATTTTGGTGCCAGGAGATATTTCTGGTCTCACGGGAGA ATCTCTTCCTGTGACCAAGAAAACAGGTGATGAAATCTTTTCCGGTTCTATATGCAAGCATGGAGAAGTTGAAGCTGTGGTGATAGCAACTGGAGTTCAC TCCTTCTTGGGAAAAGCAGCTCACTTAGTAAACTCCACTGATGTTGTAGGCCATTTTCAGAAGGTCCTTACTTCAATTGGAAACTTCTGCATTTGCTCTA TAGCCGTGGGGATGGTTCTTGAAATCATAGTCATGTTTCCGGTACAGCATCGCGTATATAGGGAAGGAATCAACAATCTCCTTGTGCTCTTGATTGGAGG AATACCCATAGCTATGCCAACGGTGTTATCTGTCACACTTGCAATCGGCTCTCATGGTTTATCCAAACAGGGTGCGATCACGAAGAGGATGACAGCAATC GAGGAAATGGCAGCCATGGATGTCCTCTGCAGTGATAAAACAGGAACTCTTACTTTGAATCGTCTTACGGTGGATGTAAACCTTATTGAGGTTCTTAACA AAGATATGGATAAGGAGATGATAATCTTGCTTGCAGCAAGAGCATCAAGACTGGAGAATCAGGATGCAATAGACGTAGCTGTAGTTAACACGCTTGATGA TCCCAAGGAGGCGCGCGCCAACATCAGGGAAGTTCACTTTATGCCTTTCAATCCAGTGGATAGACGCACTGCCATCACATATATAACCTCTGATGGCGAA TGGTACCGAGCAAGCAAAGGAGCTCCTGAGCAGATTTTAAATCTGTGCGAAGAAAAGAACGGCATTGCCAGAAGAGTGCATTCCGTCATTGATAATTTCG CTGAAAGGGGCTTCCGGTCTCTTGGTGTAGCATATCAGGAAGTTCCTGAAAGAACGAAAGAGAGTCCTGGTGGTCCTTGGATTTTCTGTGGCTTGCTACC GTTGTTTGATCCTCCAAGACACGATAGTGCCGAGACTGTTCGGAGAGCACTAAGCCTTGGAGTTTGTGTCAAGATGATAACAGGTGATCAATTGGCAATT GCCAAGGAGACTGGGAGACGACTCGGCATGGGAACAAACATGTATCCTTCTTCAGCATTATTGGGCCACGACAAGGATGAGCACGAGATTCTTCTCGTGG ATGAGCTGATCGAGAAGGCTGATGGCTTTGCTGGTGTATTCCCTGAACACAAGTACGAAATCGTAAAGATGTTGCAAGAGAAGCAGCATGTGGTTGGCAT GACTGGAGATGGTGTGAATGATGCGCCTGCTTTAAAGAAAGCAGACATTGGAATAGCTGTTGCAGGTTCTACAGATGCAGCCAGAAGTGCTGCTGACATA GTCTTAACCGAGGCTGGGTTGAGTGTGATTATCTGCGCGGTCTTGACTAGCAGGGCTATATTCCAAAGGATGAAAAATTATACGATATATGCTGTCTCAA TCACCATCAGAATTGTGGTTGCCTTTTCTATATTAGCATTGATATGGAAGTACGATTTCCCACCTTTCATGGTTCTGATCATAGCAATACTAAATGATGG AACTATAATGACCATCTCCAAAGACAGGGTGAAGCCATCTCCAGGGCCAGACAGTTGGAAGCTCAATGAGATATTTGTAACAGGAATCGTCATTGGTACA TACCTTGCTTTGTCAACTGTCCTGTTTTACTGGATTGTCGTAGACACTGTTATCTTTGAGACATGCTTCCAGGTGGTTTCCTTATCCAGTGATGCAGAGA AAGTTTCTTCTGCTGTCTATTTGCAAGTCAGCATCATTAGCCAAGCTCTTATATTTGTCACCCGGAGTCGAAGTTGGTCGTTCGTTGAGAGGCCTGGACT TCTCTTGATGTGCGCATTTCTCGTGGCTCAACTGGTGGCTACATTAATCGCAGTCTACGTGCATCTGAGCTTTGCCAGTATAAGTGGAATTGGTTGGAAG TGGGCAGGAGTAGTTTGGCTGTATTGCTTGATCTTTTATATACCCTTGGATATCCTGAAGTTTGCAGTTCGCTATGGTCTGAGCGGAGAAGCATGGAATC TCGTATTCGACAAAAAGACTGCTTTAACTTCAAAGAAAGACTACGGAAAAGATGAGAGAGCAGCAAGGTGGGTTCTCTCCCACACGAGCCAACAACGGTC CAGCTCTGCTATCGATTTCGAACCTAATGTGAGGCGATCGTCTTCCATGGCAGAACAGGCATGGAGGCGTGCCGAAATGGCCAGACTGGGGGACCTTCAT AACTGGAGAGGAAGCGAATCAGTAATGAAGCGAAATAACTTAGACCTAACGGGTATCCAAGGATCTCATAGTATTTAA
AA sequence Show only first row Show all	>Lus10037466 pacid=23167368 polypeptide=Lus10037466 locus=Lus10037466.g ID=Lus10037466.BGIv1.0 annot-version=v1.0 MADDMFTPLLDPENFDQALVDLERLPLEDVFEQLRTSLDGLASGDAEARLTIFGPNKLEEKSENKLLKFLGFMWNPLSWVMEAAAVMAIVLAYGGGQGPD WQDFVGIVCLLLINSTISFIEENNAGDAAAALMAGLALKTKVLRDGEWQERDAAILVPGDISGLTGESLPVTKKTGDEIFSGSICKHGEVEAVVIATGVH SFLGKAAHLVNSTDVVGHFQKVLTSIGNFCICSIAVGMVLEIIVMFPVQHRVYREGINNLLVLLIGGIPIAMPTVLSVTLAIGSHGLSKQGAITKRMTAI EEMAAMDVLCSDKTGTLTLNRLTVDVNLIEVLNKDMDKEMIILLAARASRLENQDAIDVAVVNTLDDPKEARANIREVHFMPFNPVDRRTAITYITSDGE WYRASKGAPEQILNLCEEKNGIARRVHSVIDNFAERGFRSLGVAYQEVPERTKESPGGPWIFCGLLPLFDPPRHDSAETVRRALSLGVCVKMITGDQLAI AKETGRRLGMGTNMYPSSALLGHDKDEHEILLVDELIEKADGFAGVFPEHKYEIVKMLQEKQHVVGMTGDGVNDAPALKKADIGIAVAGSTDAARSAADI VLTEAGLSVIICAVLTSRAIFQRMKNYTIYAVSITIRIVVAFSILALIWKYDFPPFMVLIIAILNDGTIMTISKDRVKPSPGPDSWKLNEIFVTGIVIGT YLALSTVLFYWIVVDTVIFETCFQVVSLSSDAEKVSSAVYLQVSIISQALIFVTRSRSWSFVERPGLLLMCAFLVAQLVATLIAVYVHLSFASISGIGWK WAGVVWLYCLIFYIPLDILKFAVRYGLSGEAWNLVFDKKTALTSKKDYGKDERAARWVLSHTSQQRSSSAIDFEPNVRRSSSMAEQAWRRAEMARLGDLH NWRGSESVMKRNNLDLTGIQGSHSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	0	1
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	1.0	0.9866
AT3G57440			unknown protein		Lus10031072 [exp]	3.9	0.9629
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10011349 [exp]	5.2	0.9495
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	15.9	0.9680
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	22.4	0.9668
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	22.8	0.9413
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	23.7	0.9069
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	24.4	0.9436
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	25.4	0.9665
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042765 [exp]	25.6	0.8868

Compare expression of checked genes

Lus10037466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.