Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05577 157 / 1e-43 Domain of unknown function (DUF966) (.1) AT5G59790 100 / 5e-23 Domain of unknown function (DUF966) (.1) AT3G46110 97 / 2e-22 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 99 / 4e-22 Domain of unknown function (DUF966) (.1) AT5G10150 97 / 8e-22 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003921 [exp] 516 / 0 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 101 / 9e-23 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 100 / 1e-22 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 100 / 2e-22 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 99 / 3e-22 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 99 / 4e-22 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 98 / 6e-22 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 80 / 1e-16 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 80 / 3e-16 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024900 [exp] 169 / 1e-47 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 164 / 1e-45 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 103 / 1e-23 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 99 / 2e-22 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 99 / 7e-22 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 96 / 3e-21 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 94 / 9e-21 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 90 / 2e-20 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 89 / 1e-19 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10037468 pacid=23167187 polypeptide=Lus10037468 locus=Lus10037468.g ID=Lus10037468.BGIv1.0 annot-version=v1.0 ATGGATGTTGCAACGTCGTTCAACAACGGCGGGATGATGGGTTCAAACGGCGGCGGCGGCGGTGGCGGAGGAGGAGGAGAGTTCCGGCGGCTTCACATCG TTTACTTCCTGACTCGTATGGGCCGCATCGAGCATCCCCATCTTATTCGCGTCCGTCATCTTAATCGGAACGGCGGCGTTTTCTTGCGAGATGTGAAGAG ATGGATGGGAGAGTTGCGGGGAAAAGACTTGCCGGATTCCTTCTCTTGGTCTTACAAGAGGAGGTACAAAACCGGTTACATTTGGCAAGATTTGATCGAC GACGATCTAATCACGCCAATCTCCGACAACGAATATGTCCTCAAGGGATCAGAAATCACGACAGATGACGAAATTCCAGTCGCGGTCCCTCTTAAGGAGA CCGCGACAAGCAGTCCCTCCTCCTCGTCATCCTCCTCCACCACATTCGAGATGGTACCGGGCTCCACCGTGCAAAGTAACGTCGTTTCGAAGGATCAGGA GCAGGGCAACCACCACCATTTAGAGCCGTTTTCAGTAGGGACAAAACATTATTCAAATCAAAGCTACTCATCCACCGGCTCCTCCACGTCATCATCAAGT CCGATCGTGGATCGTCCGTTGACGACGTCTCCAATCGTCGTCGACAAGACCACTGTAATCGGCAGTGGTGGGGATGTTCGGGATTCTCCTACAATATCGC CTTACTACACTTACACATTTGATCACAGGAACAAATGCCAGGAATATTCGTCGCCATCGCCGACGACTGGTCGTTGCTCGCAATCCCCTGCAATGAAATC AAGAAGGAGCTGGAGGCAGAGGTATTATTCCAACGCGGCCAGTTCCAGAGTAATGCTCCGTAGGCTGATGGTTTGCGGCGGTGCTCCTGCCGATACGGCC GGGGTCGACGCCGTGCTGGTTGCGGTCAACAAGTCAACGTCGACTGTGCAGGGTAATGGTACTGTGAATACACAGTCCACGTCAGCAGCGAAAAACAGGG CTTTGGTCGGGACTGCTCATGAATTGCAGCTTAAGCTACACCGTGATCAAAGTGCTCGCCGCCGAAAAGAAGAGTCTGAAGGATCAAATCGAAAAGGGTC GTCGCAGAGTGGCTTATTCTGCCGGAAAACGGATGTTTCTGAAGCCTATAGACCCGTCGGAGCTCCGACTTGCACGCAATGCGGCAAGTCGTTTCGGCCA GAGAAGCTACACATGCACATGTCCAGATCCTGCAGAGGAATGAGGAAAGATTCTACAGCGTCTCCTGATGAAGAAATGGCGTCCCCGACATCACCCTGTA AACCGTTTGTGAAGAAACAACTAATTACCGCAACGACTGCTTAA
AA sequence Show only first row Show all	>Lus10037468 pacid=23167187 polypeptide=Lus10037468 locus=Lus10037468.g ID=Lus10037468.BGIv1.0 annot-version=v1.0 MDVATSFNNGGMMGSNGGGGGGGGGGEFRRLHIVYFLTRMGRIEHPHLIRVRHLNRNGGVFLRDVKRWMGELRGKDLPDSFSWSYKRRYKTGYIWQDLID DDLITPISDNEYVLKGSEITTDDEIPVAVPLKETATSSPSSSSSSSTTFEMVPGSTVQSNVVSKDQEQGNHHHLEPFSVGTKHYSNQSYSSTGSSTSSSS PIVDRPLTTSPIVVDKTTVIGSGGDVRDSPTISPYYTYTFDHRNKCQEYSSPSPTTGRCSQSPAMKSRRSWRQRYYSNAASSRVMLRRLMVCGGAPADTA GVDAVLVAVNKSTSTVQGNGTVNTQSTSAAKNRALVGTAHELQLKLHRDQSARRRKEESEGSNRKGSSQSGLFCRKTDVSEAYRPVGAPTCTQCGKSFRP EKLHMHMSRSCRGMRKDSTASPDEEMASPTSPCKPFVKKQLITATTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	8.3	0.7403
					Lus10014982 [exp]	8.4	0.7362
					Lus10003448 [exp]	13.0	0.7154
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	21.4	0.6882
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	23.2	0.6925
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	27.7	0.6381
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	32.8	0.6585
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	34.2	0.6582
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001032 [exp]	34.6	0.6592
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	44.4	0.6879

Compare expression of checked genes

Lus10037468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.