Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44380 177 / 8e-52 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 174 / 1e-50 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 164 / 6e-47 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 162 / 3e-46 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 158 / 8e-45 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 146 / 1e-40 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44390 129 / 1e-34 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G27660 91 / 5e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 82 / 4e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G32840 74 / 5e-14 proline-rich family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003919 [exp] 409 / 9e-143 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003918 [exp] 262 / 1e-83 AT2G32840 166 / 1e-48 proline-rich family protein (.1.2) Lus10016256 [exp] 63 / 2e-10 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 62 / 4e-10 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 55 / 6e-08 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 47 / 1e-05 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G229900 [exp] 241 / 4e-76 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 102 / 8e-24 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229800 [exp] 97 / 5e-22 AT2G32840 136 / 2e-37 proline-rich family protein (.1.2) Potri.012G038400 [exp] 91 / 5e-20 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057900 [exp] 90 / 4e-19 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 77 / 2e-14 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 75 / 7e-14 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 69 / 8e-13 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 71 / 1e-12 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 69 / 6e-12 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10037470 pacid=23167284 polypeptide=Lus10037470 locus=Lus10037470.g ID=Lus10037470.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTACTCCCACCAACACTAACCCCGCCTCCGCCACCACCACCACCACCGCACGACCGGCTGCTGGAAGACCCCAGCTTTCTCATCCATCTC CATACCCAATTTACCACCAGCAAGTCCAACAGCAGCAGCACTACCTCAACAACAACAACATCAGATCCCAAACCCTGATTCCCACCTCCAATTCCCCGCA GCCGCCGCCTGGAGGGATTCTGTATCCCGTCGCTTCCTCCGGCCGCGGCTTCATTCCTCCTCCAGTGGTGCCGCCGCCGCCCACCCGCCCTTCCTCCTCC GATCACTCCCGAAGCTACAATTCCTCCGCCTCCCCTTCACTTGCTCTCTCCAATTACAGAGCTGCCTCTCCTTCTCCTCTCTCTCACCCTTACTATCCTC CTCCTGCGCATAGGCTTCATCCTTCTCTCCCCAACAACCCTCACTATCTTCAGTCTCCTCCTCCTCCTCCTCCAGCTTCCGCTCCGATTATCGGCGTCCC CATCGTTCCCCAGCTCAAGGTTGCCCCATCTCCTGCTCCAGTTTCTGATTCTAATGGCTACAAACATACAAGAGACACGCCAGATGATCCTGTCGTTGTG ATTAGAGGTCGGAAAGTAGTAGTACCAGAAGGTGCTTCGATTTATGCACTTTGCCGATCATGGTTGAGAAATGGCGTTCCGGAGAAACGTCAGATGTCCC ATGGTGAAGGTGTAAGTACTCTCCCAAGACCCTTGCCTTTACCTGTGGTGGACAGTAATTCGCCGACTAATAAAGAAGCCGAAGAAGAAGAAGATAGCAA AGAGGCTGAAGAATCTGTTGAAAATTTATCTGCGCAAGACTTGTTGAAGAGACACGTTAAGCATGCGAAAAAGGTTCGAGCCAGTAGTCTCGCATCAAAC CGCGACTCCTCTAATCAAATCGAGCAAAATGGCAGCAACACGACGGCATCGAGAACAAGCAACGTCAGGTTCCAAACGACGCGCAGACGACCTTGCGTTA AGCATTTCAGCCACTCCCACCCACTTCGCCCCATCGACGTAAGAGAAGAGGAAGAGCTTATATGCTCCGGATGCGAGCTGGATCTCTCCGGTTCGGCCTA TAGTTGTAGCAAGTCAACCTGCGAGTTCTTCCTCCACGGAACGTGCTTCGACCTCCCCAAGCGCCTTCAGTTCCCTCCTGATCATGTTTCCCGCCATCAA CATCCCCTCGTCCTCCTCCCTTCCCCTCCTGACGGTGGCAAGGGAGAGTACGCGAAATTCGTGTGTAACGCTTGTGGTGACTACGGCACTGGCTTCACCT ATAGCTCGGAATCTTCCGAGTCTTTCAATCTCCATGTGACGTGCGCTTTCCTCCCCGATGTAATCAAGCATGTCGACCACGATCATCCGCTCCATCTCTT TGTTCCTTCCACGTCCCTAGAGAAAGGAGCAATCAGCTCCTCGAACTCGAACTCCATTTTCACATGTGATGTCTGCCGGAAGCATGTTCCGAAAAACTGC TGGATCTACTACTGCCTCGAATGCGACTATGGCACCGACCTCGCTTGCACCTCCACCGCGTAA
AA sequence Show only first row Show all	>Lus10037470 pacid=23167284 polypeptide=Lus10037470 locus=Lus10037470.g ID=Lus10037470.BGIv1.0 annot-version=v1.0 MASPTPTNTNPASATTTTTARPAAGRPQLSHPSPYPIYHQQVQQQQHYLNNNNIRSQTLIPTSNSPQPPPGGILYPVASSGRGFIPPPVVPPPPTRPSSS DHSRSYNSSASPSLALSNYRAASPSPLSHPYYPPPAHRLHPSLPNNPHYLQSPPPPPPASAPIIGVPIVPQLKVAPSPAPVSDSNGYKHTRDTPDDPVVV IRGRKVVVPEGASIYALCRSWLRNGVPEKRQMSHGEGVSTLPRPLPLPVVDSNSPTNKEAEEEEDSKEAEESVENLSAQDLLKRHVKHAKKVRASSLASN RDSSNQIEQNGSNTTASRTSNVRFQTTRRRPCVKHFSHSHPLRPIDVREEEELICSGCELDLSGSAYSCSKSTCEFFLHGTCFDLPKRLQFPPDHVSRHQ HPLVLLPSPPDGGKGEYAKFVCNACGDYGTGFTYSSESSESFNLHVTCAFLPDVIKHVDHDHPLHLFVPSTSLEKGAISSSNSNSIFTCDVCRKHVPKNC WIYYCLECDYGTDLACTSTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	0	1
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	4.0	0.8410
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	4.2	0.8181
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	6.3	0.8210
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	7.0	0.8159
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	11.6	0.8010
AT1G06980			unknown protein		Lus10020386 [exp]	12.7	0.7870
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	13.0	0.7969
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	13.0	0.8078
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	13.5	0.7536
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	14.0	0.8432

Compare expression of checked genes

Lus10037470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.