Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31960 251 / 5e-76 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT1G05570 251 / 9e-76 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT5G13000 244 / 1e-73 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G13680 185 / 7e-53 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G59100 146 / 2e-39 ATGSL11 glucan synthase-like 11 (.1) AT5G36870 129 / 1e-33 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT1G06490 129 / 1e-33 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G14570 120 / 3e-30 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G14780 105 / 4e-26 unknown protein AT3G07160 64 / 2e-11 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003917 [exp] 362 / 4e-127 AT2G31960 231 / 4e-69 glucan synthase-like 3 (.1.2) Lus10037469 [exp] 273 / 2e-83 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 271 / 1e-82 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 253 / 1e-76 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10013744 [exp] 253 / 1e-76 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10002097 [exp] 178 / 2e-50 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10033482 [exp] 149 / 2e-40 AT2G13680 1556 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10001424 [exp] 144 / 1e-38 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10020751 [exp] 139 / 4e-37 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012200 [exp] 250 / 2e-75 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 249 / 4e-75 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 244 / 2e-73 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 184 / 1e-52 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.005G203500 [exp] 139 / 5e-37 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 139 / 7e-37 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 108 / 2e-26 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G011900 [exp] 64 / 3e-11 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.015G089300 [exp] 64 / 3e-11 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.015G089500 [exp] 54 / 1e-08 AT2G36850 337 / 1e-106 CHORUS, glucan synthase-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04652 [flax] [poplar] Vta1 Vta1 like
Representative CDS sequence Show only first row Show all	>Lus10037471 pacid=23166998 polypeptide=Lus10037471 locus=Lus10037471.g ID=Lus10037471.BGIv1.0 annot-version=v1.0 ATGTCTGACCATGCTGAGACCATTCCGGACAGTGAGGCTGTTCCGTTTTCGTTGGTGGAGATCGGTCCGATTCTCCGTGCTGCCGATGAAGTAGAGCTTA GCAACCCAAGAGTTGCTCATCTATGCCGGTTCTATGCTTTTGAGAAAGCTCACAAGTTAGATCCTAAGGCCAGCGGTCGCGGCGTTCATCGATTCAGAAC TGCACTCCTACGACGTCTCGAAAAGGAAGATGAGACCACTAGGCGAGCAATGACGAGGAGGAGTGATGCTCGCGAAATGCAGGAATTTTACAGTGATTAC TTCGAGAAGTACATCCAAGCTATGAAAATAGCTGCTGACAAGGCTGATCGTGGACATCTTACTAAAGCATATCAAACTGCAGCAGTCCTCTTTGAGGTTC TGAAAGCTGTCAACCCAACAGCAGAGCCTGATCCTGAAGAGATTCTGGAAGCTCAAACCAAAGCTGAAGAGGAAACAGAGATATGTGTCCCTTACAGCAA AACTCAGATTCAAGCTGCTGTTTCTGCACTGAGGAATTCAGAAGGTGATAAGAAGAAGGAAAATGAAGAGATATTAGATTGGCTTCAAGCTATGTTTGGA TTTCAGCTACTCATGATGCAGAAAGGTAATGTTGATGTGGCCCTGGCCGAGTGGACCCGCGTCGGAGTGGCCCTCGCTGAGAGGGCCAGCACAAGTGCCC AACCGTCGCAATCTGCCGCACCAGTGCCAGCCGCAGCAATGCCACCACCACCACCACCACTCTACCGGTGCCCACGACCAGCAGAGTCATCATGGTCATA TTTGTTCGAACTAGGAGAGGTTGATCCATCTTAG
AA sequence Show only first row Show all	>Lus10037471 pacid=23166998 polypeptide=Lus10037471 locus=Lus10037471.g ID=Lus10037471.BGIv1.0 annot-version=v1.0 MSDHAETIPDSEAVPFSLVEIGPILRAADEVELSNPRVAHLCRFYAFEKAHKLDPKASGRGVHRFRTALLRRLEKEDETTRRAMTRRSDAREMQEFYSDY FEKYIQAMKIAADKADRGHLTKAYQTAAVLFEVLKAVNPTAEPDPEEILEAQTKAEEETEICVPYSKTQIQAAVSALRNSEGDKKKENEEILDWLQAMFG FQLLMMQKGNVDVALAEWTRVGVALAERASTSAQPSQSAAPVPAAAMPPPPPPLYRCPRPAESSWSYLFELGEVDPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	0	1
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	1.0	0.8990
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	3.9	0.8572
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	5.8	0.8582
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	6.2	0.7569
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	7.7	0.8259
					Lus10020368 [exp]	10.4	0.8301
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	12.4	0.8154
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	12.5	0.8122
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	13.0	0.7339
					Lus10039390 [exp]	13.5	0.7893

Compare expression of checked genes

Lus10037471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.