Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32850 654 / 0 Protein kinase superfamily protein (.1.2) AT5G08160 117 / 8e-29 ATPK3 serine/threonine protein kinase 3 (.1.2) AT1G33770 94 / 8e-20 Protein kinase superfamily protein (.1) AT1G03740 90 / 1e-18 Protein kinase superfamily protein (.1.2) AT5G03730 90 / 2e-18 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 87 / 9e-18 Protein kinase superfamily protein (.1) AT5G44290 87 / 9e-18 Protein kinase superfamily protein (.1.2.3.4) AT4G18700 86 / 2e-17 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G50860 86 / 2e-17 Protein kinase superfamily protein (.1) AT1G53050 85 / 4e-17 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003916 [exp] 1150 / 0 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007963 [exp] 130 / 5e-33 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10013493 [exp] 112 / 1e-26 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10031651 [exp] 92 / 3e-19 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 91 / 8e-19 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10009464 [exp] 89 / 3e-18 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001285 [exp] 89 / 4e-18 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 89 / 5e-18 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10009062 [exp] 88 / 7e-18 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G228100 [exp] 748 / 0 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G055200 [exp] 116 / 2e-28 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.012G057300 [exp] 116 / 2e-28 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.013G130000 [exp] 92 / 3e-19 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.005G153100 [exp] 91 / 1e-18 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 90 / 2e-18 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 89 / 2e-18 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 89 / 2e-18 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 87 / 1e-17 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 86 / 4e-17 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037472 pacid=23167035 polypeptide=Lus10037472 locus=Lus10037472.g ID=Lus10037472.BGIv1.0 annot-version=v1.0 ATGTGGAAGTTCAAACCATTTGCTCAAAAGGAACCAGTGGGGCTAGAAGGACGTTACGTTGACGTTGGAAACCTCAAGATTCATGTTAAGCAAGCCATCG CCGAGGGAGGGTTTTCGCGCGTTTATCTAGCTCAGGATGCTGTGCATTTGTCTAAGCAGTATGCTTTAAAGCATATGATATGCAGTGATGAGGAGTCTCT AGAGCTGGTGATGAAGGAAATCAATGTGATGAAATCGCTCAAGGGACATCCCAATGTTGTGATGCTTTCCGGGCATACTATATTGGATACGGGAAGGACG AAGGAAGCACTGCTCGTGTTGGAATTCTGTGAGAAATCTCTGGTCAGTGTTCTTGAGTGCAGAGGAGGAGCCGGTTATTTTGAAGAGAAACAGGCTCTTT CCATATTCAGAGATGTTTGCAATGCTGTTTATGCTATGCATTGTCAATCCCCTCCTATTGCTCATCGGGACTTGAAAGCTGAGAATCTTCTGCTAGGACC AGATGGATCTTGGAAATTATGCGACTTTGGGAGCACTTCAACTAACCACAAGCGCTTTGAAAAACCTGAAGAGATGGGAATTGAAGAAGATAACATTCGC AAGCATACCACGCCTGCTTACAGAGCCCCCGAGATGTGGGATCTGTATCGGCGAGACCGTATAAGTGAGAAGGTTGACATATGGGCACTTGGCTGCTTAC TCTTTCGCATATGCTATCTAAAAAGTGCATTTGATGGAGAATCAAAGCTGCAAGTATTAAATGGAAACTACCGAATTCCAGAGTCACCAAAGTACAACTC AGCAGTGACAGATTTACTCAGAGACATGCTTCAAGGTTCCCCCGATATTTGGTTCCGTGTCAACCAATTGTTGCCAGAGAATCTGCAGAAATCGTTGCCT GATGGACCTCCTGAAACACATTCTCATGGAACTCATGAAGCGGCTTTTCCGAAACAGCCGAATAAGTCGTCTCCAATGCCTCGTAGAAGCCCACCTGCTC CCCCTTCGTCTGGGACAGGGGCACGCTCGGGGCAACCGATGGGTGGTGCTTTCTGGTCCACTCAACACGCAAAGGAGTCAATTGTTGAAGATAATGTGAA GCCGAAATTTGACGAAGAACGAAGCTTTAGTGCATCACACAAAGAGAGGATTCGTCCAGAATCCACAAAGGCCGAGGCTGCACAAAGTCATGGAACTAAA AGCAATACTTCAAAGGACTTTGAAATGAACTTCACCAACAAACCCAGAGACCATGGTGTTCAGCAGCCGAAAGTGTCGAACTCGGAGAGTACGACTCTGT TCCGGGACGAAGCATTCAATAGCTTTGTTGCTGAATTCGATAACAACAAGGTTAATCCAAGTGTCGGTCAGAAATCAAGCCAGGGGGATGGATTGGAAGC CGAAGTTGAGAGGCTGAAAGAGCAGGTGAAGCAGGCGAAGTTGGAGAAGGCCGAAATGACTTCGAAGTTCGAAAAGCTCTCTGCCATCTGCCGATCTCAG AGGCAAGAAATCAGCGAGCTGAAACATAGTCTCGCCGCTAAAACTCCATCTCCGAATAAAACTGGAGAATCACCTGCTAATGTTACTCCTCAGCAGAAAT TCGAGAAAGGCGCCAAGAACCTGGAACAAAGCTCGTGGCAAGCTTTCGCGGATGAGCAAGGTTTCAGGGCTGTTCCTTCTTCTGCAGGTGGACAAGCTTC AGGTTATAATAACAATGCTGGAAGGAGAAAGAGTGTGGAGAGTCAGTCGAATGCTCAGCCAGCTGGATGGGCTGGGTTCTAG
AA sequence Show only first row Show all	>Lus10037472 pacid=23167035 polypeptide=Lus10037472 locus=Lus10037472.g ID=Lus10037472.BGIv1.0 annot-version=v1.0 MWKFKPFAQKEPVGLEGRYVDVGNLKIHVKQAIAEGGFSRVYLAQDAVHLSKQYALKHMICSDEESLELVMKEINVMKSLKGHPNVVMLSGHTILDTGRT KEALLVLEFCEKSLVSVLECRGGAGYFEEKQALSIFRDVCNAVYAMHCQSPPIAHRDLKAENLLLGPDGSWKLCDFGSTSTNHKRFEKPEEMGIEEDNIR KHTTPAYRAPEMWDLYRRDRISEKVDIWALGCLLFRICYLKSAFDGESKLQVLNGNYRIPESPKYNSAVTDLLRDMLQGSPDIWFRVNQLLPENLQKSLP DGPPETHSHGTHEAAFPKQPNKSSPMPRRSPPAPPSSGTGARSGQPMGGAFWSTQHAKESIVEDNVKPKFDEERSFSASHKERIRPESTKAEAAQSHGTK SNTSKDFEMNFTNKPRDHGVQQPKVSNSESTTLFRDEAFNSFVAEFDNNKVNPSVGQKSSQGDGLEAEVERLKEQVKQAKLEKAEMTSKFEKLSAICRSQ RQEISELKHSLAAKTPSPNKTGESPANVTPQQKFEKGAKNLEQSSWQAFADEQGFRAVPSSAGGQASGYNNNAGRRKSVESQSNAQPAGWAGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32850			Protein kinase superfamily pro...		Lus10037472 [exp]	0	1
AT2G40820			unknown protein		Lus10038998 [exp]	4.8	0.8371
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	10.1	0.8333
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	15.4	0.8191
AT5G17910			unknown protein		Lus10020367 [exp]	17.1	0.8239
AT2G40820			unknown protein		Lus10027293 [exp]	19.7	0.8031
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	20.7	0.8007
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	21.7	0.8087
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	24.2	0.7781
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	27.7	0.8063
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	31.7	0.7857

Compare expression of checked genes

Lus10037472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.