Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 587 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 486 / 7e-169 BGLU16 beta glucosidase 16 (.1.2.3) AT5G44640 477 / 3e-165 BGLU13 beta glucosidase 13 (.1) AT5G42260 476 / 5e-165 BGLU12 beta glucosidase 12 (.1) AT2G44450 472 / 3e-163 BGLU15 beta glucosidase 15 (.1) AT2G25630 449 / 2e-154 BGLU14 beta glucosidase 14 (.1) AT3G18080 437 / 9e-150 BGLU44 B-S glucosidase 44 (.1) AT1G47600 436 / 6e-149 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT1G51470 433 / 8e-148 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT5G24550 426 / 1e-144 BGLU32 beta glucosidase 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003915 [exp] 936 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 616 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 546 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 546 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 522 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 512 / 8e-179 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 504 / 6e-176 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 503 / 2e-175 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10026057 [exp] 487 / 5e-169 AT2G44450 554 / 0.0 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227200 [exp] 630 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 615 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 527 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 519 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G223800 [exp] 515 / 3e-180 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 515 / 4e-180 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223900 [exp] 515 / 4e-180 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G224000 [exp] 514 / 1e-179 AT3G60120 526 / 0.0 beta glucosidase 27 (.1) Potri.001G223700 [exp] 513 / 3e-179 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223716 [exp] 513 / 3e-179 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10037473 pacid=23167222 polypeptide=Lus10037473 locus=Lus10037473.g ID=Lus10037473.BGIv1.0 annot-version=v1.0 ATGAATTGCTCCTTGATTATCCTCCTCCTTCTTCAGATTGCTGCAGCCGTCGCCGGCATCCGGTCGGTGCCGCCGAAGCCAAGCAAGGTGCTGGCTTTCA CTCGGGCCAGCTTTCCAGAACGCTTTCTTTTCTCGGATGGCAGGGGACCTAGCATCTGGGATACCTTTGTCAAGCAACATCCAAAAAAAATTGCGGATCA CAGTAACGGAGATTTGGCCGATGACTTCTATAACAAATACAGGGAAGACATAAAGCTGGTGAAGAAGATTGGACTGGACTCGTTCAGATTTTCCATATCC TGGAGCAGGATACTGCCAAAGGGCACACTGAGTGGGGGAGTGAACCAACTTGGCATCAAGTTCTACAATGACCTTATTGATGAGATCCTTGCCAATGGGA TAAAGCCATTTGTGACTCTGTGGCACTTCGATCTCCCGCAAGCTCTCGAAGACGAATACGGTGGATTCTTGAGCCCCAAGATCATGGAGGATTTCGTGGC GTACGCGGACTTGTGCTTCAAGACATTTGGGGACAGGGTGAAGCTATGGGTGACGCTCAACGAGCCCAACGGCTACGCGATGAACGCATACAACTTCGGC AACTTCGCACCCGGGCGATGTTCCAACTACGTCGGGAACTGCACCGCGGGCAACTCCGCGACGGAGCCGTACATCGCGGGGCATCATCTGCTGATGTGCC ATGCGTGGGCGGTGAAGTTGTACAGAGAAAAGTACCAGAAAGTCCAGAAGGGAGAGATCGGAATGACGATCGTGACGCATTGGTTCACTCCCAAATACGA CACCGCTTCTGGTCGCATCGCCGCCTCCCGGGCCATCGACTTCTTCTTCGGATGGTTTGCGAACCCAATCACGTACGGAGAGTATCCGACGAGCATGGTG AAGTTGGTCGGGAAGAGGCTGCCGAGATTCACAGAAGCGGAGAAAAAAATGGTCGAGGGTTCTTACGACTTCATGGCCGTGAATTACTACACTACCCAAT ACGCCGAAGAAGCTCCTCCGTTCACCAGCCGCGCCGCCGCCGCCGCCAACCTTAGCTACTCTTCCGACCGCCGCCTCATTTTGACTTCTGACAAGAACGG CGTCCCCATTGGCACACTGACCGGTTTGAGTTGGTTATTCATCTATCCGAAAGGGTTCGAAGAATTCCTACTGTATGTGAAGAACACTTTCGACAATCCG ACGATATATATCACTGAGAATGGATTGGCAGACAAGACAGAATTGCCACTTGAAATGGCGATTAAGGATGCATTGAGGATAAGATACCACAGCCTCCACC TCCAATCTCTTTTGGCAGCCATGAAGGAGGGGGTGAAGGTGAAGGGTTACTACGTGTGGTGTTTCTTGGACGACTTCGAATGGGATGCTGGCTTGTCGAT CAGATTCGGGATAACTTACGTCGATTTCGCACACAACTTCAGACGATACCTCAAATACTCTGCCTATTGGTTCAAGATGATGCTGCTTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10037473 pacid=23167222 polypeptide=Lus10037473 locus=Lus10037473.g ID=Lus10037473.BGIv1.0 annot-version=v1.0 MNCSLIILLLLQIAAAVAGIRSVPPKPSKVLAFTRASFPERFLFSDGRGPSIWDTFVKQHPKKIADHSNGDLADDFYNKYREDIKLVKKIGLDSFRFSIS WSRILPKGTLSGGVNQLGIKFYNDLIDEILANGIKPFVTLWHFDLPQALEDEYGGFLSPKIMEDFVAYADLCFKTFGDRVKLWVTLNEPNGYAMNAYNFG NFAPGRCSNYVGNCTAGNSATEPYIAGHHLLMCHAWAVKLYREKYQKVQKGEIGMTIVTHWFTPKYDTASGRIAASRAIDFFFGWFANPITYGEYPTSMV KLVGKRLPRFTEAEKKMVEGSYDFMAVNYYTTQYAEEAPPFTSRAAAAANLSYSSDRRLILTSDKNGVPIGTLTGLSWLFIYPKGFEEFLLYVKNTFDNP TIYITENGLADKTELPLEMAIKDALRIRYHSLHLQSLLAAMKEGVKVKGYYVWCFLDDFEWDAGLSIRFGITYVDFAHNFRRYLKYSAYWFKMMLLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	0	1
AT4G35980			unknown protein		Lus10009388 [exp]	2.6	0.8672
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	7.2	0.8253
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	7.4	0.8473
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	9.2	0.8402
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	9.4	0.8606
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	10.5	0.8275
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	11.2	0.8282
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	11.7	0.7389
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	14.0	0.8232
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	14.7	0.8600

Compare expression of checked genes

Lus10037473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.