Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44500 647 / 0 O-fucosyltransferase family protein (.1.2) AT3G07900 577 / 0 O-fucosyltransferase family protein (.1) AT5G63390 487 / 3e-169 O-fucosyltransferase family protein (.1) AT5G35570 229 / 4e-68 O-fucosyltransferase family protein (.1) AT5G64600 224 / 3e-67 O-fucosyltransferase family protein (.1) AT4G24530 224 / 3e-67 O-fucosyltransferase family protein (.1) AT1G76270 224 / 9e-67 O-fucosyltransferase family protein (.1) AT5G01100 221 / 3e-65 O-fucosyltransferase family protein (.1) AT5G65470 218 / 5e-65 O-fucosyltransferase family protein (.1) AT1G20550 216 / 4e-64 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003914 [exp] 784 / 0 AT2G44500 765 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10037144 [exp] 233 / 8e-71 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 233 / 2e-70 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 231 / 1e-69 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 226 / 2e-68 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 223 / 5e-67 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 225 / 9e-67 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 221 / 8e-65 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 220 / 1e-64 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227000 [exp] 677 / 0 AT2G44500 754 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.009G022500 [exp] 657 / 0 AT2G44500 744 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.015G092600 [exp] 482 / 3e-167 AT5G63390 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 233 / 9e-71 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 225 / 1e-67 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 225 / 1e-67 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 224 / 3e-66 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 224 / 1e-65 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 216 / 2e-64 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 214 / 1e-63 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037475 pacid=23166994 polypeptide=Lus10037475 locus=Lus10037475.g ID=Lus10037475.BGIv1.0 annot-version=v1.0 ATGGGGTACGCGCCGTGTCTAGGGTTCACCAGGGAGTATAAGAGAGTCAGTGAAGGTTTGCTGAAGGAAAGGAGTAAGTATCTGCTGGTGGTGGTTTCAG GTGGGATGAATCAGCAGAGGAATCAGATCGTGGATGCAGTCGTCATCGCCAGGATCCTCGGCGCTACTCTGGTGGTTCCTATCTTGCAAGTCAACGTCAT TTGGGGAGACGAAAGTGAGTTCTCTGACATATTCGATTTGGAGCATTTCAAGAGAGTGCTCGCGGACGATGTGAGGATCGTCTCGTCGTTGCCGTCGACG CACATAATGACGAGGCCGGTTGAAGAGAGACGGACTCCTCTTCAAGCTTCTCCTCAATGGATCCGTTCCCGCTATCTCAAACGTACTTTCCAAGTGTGGC AAACGTGTATAAGGAAACTCCATGATTCCATATCCAGCACTTGTTTTGTTTGCATTGAATGTCATTCTTTTGACAAAAAGCATATCTCTGACGTTTTCCC ATTGGTTAACATTTGGCAGCTAAAGAGGGACGGGGTATTGCTTCTGCGTGGTTTGGATTCAAGGCTGTCCAAGGATCTTCCTTCGGATCTGCAGAAACTT CGATGCAAGGTTGCATTCAGTGCGTTGAGGTTTGCTCCATCGATCATGGGACTGGGGAACAAGATTGCAGATAGGATGGAGAGTAAAGGTCCATACATTG CACTTCATCTCCGGATGGAGAAAGATGTGTGGGTTAGAACAGGGTGCCTTCCTGGTTTGAGCTCCGAGTACGACGAGATGATTGCCAACGAGAGGCAACA ACGACCCGAGCTTCTCACTGCAAGATCGAACATGACTTACCACGAACGGAAGCTCGCCGGATTGTGCCCTTTGAATGCCATGGAGGTCGCCAGGCTGCTG AAAGCACTTGGAGCTCCAAAGGATGCCAGGGTATTCTGGGCCGGAGGGGAACCACTCGGAGGCCTCGAGTCATTATCACCCATTACAAAGGAGTTCCCAC ATTTCTTCAACAAGCGTGACCTAGCATTACCCGGTGAGCTCGAACCGTATTCAAAGAAAGCTTCTGTAATGGCTGCCATCGACTTCATAGTGTCCGAGAG AAGCGAGGTGTTCATGCCGTCTCATGGAGGGAACATGGGGCACGCCATGCAAGGGCACCGTGCATTTGCAGGGCACAAGAAGTACATAACACCGAATAAA AGACACATGCTTCCTTACTTCCTTGATGCTTCTCTACCCGAAGCAGAGTTCAACAGAGTCATCAGAGAATTACACAGCGAGTCTTTGGGACAGCCTGAGC TCAGAAGCAGTAAAGCCGGAAGGGATGTTACGAAGTTTCCGATTCCTGAATGCATGTGCAATACTACTTCGTCACACTGA
AA sequence Show only first row Show all	>Lus10037475 pacid=23166994 polypeptide=Lus10037475 locus=Lus10037475.g ID=Lus10037475.BGIv1.0 annot-version=v1.0 MGYAPCLGFTREYKRVSEGLLKERSKYLLVVVSGGMNQQRNQIVDAVVIARILGATLVVPILQVNVIWGDESEFSDIFDLEHFKRVLADDVRIVSSLPST HIMTRPVEERRTPLQASPQWIRSRYLKRTFQVWQTCIRKLHDSISSTCFVCIECHSFDKKHISDVFPLVNIWQLKRDGVLLLRGLDSRLSKDLPSDLQKL RCKVAFSALRFAPSIMGLGNKIADRMESKGPYIALHLRMEKDVWVRTGCLPGLSSEYDEMIANERQQRPELLTARSNMTYHERKLAGLCPLNAMEVARLL KALGAPKDARVFWAGGEPLGGLESLSPITKEFPHFFNKRDLALPGELEPYSKKASVMAAIDFIVSERSEVFMPSHGGNMGHAMQGHRAFAGHKKYITPNK RHMLPYFLDASLPEAEFNRVIRELHSESLGQPELRSSKAGRDVTKFPIPECMCNTTSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	0	1
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	2.0	0.7953
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	6.8	0.8097
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	12.6	0.7415
AT3G07510			unknown protein		Lus10025856 [exp]	12.7	0.7373
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	13.1	0.7560
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	14.3	0.7106
AT4G18950			Integrin-linked protein kinase...		Lus10002765 [exp]	15.6	0.6814
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	17.3	0.7081
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	18.8	0.7239
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	20.4	0.7650

Compare expression of checked genes

Lus10037475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.