Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40850 385 / 6e-134 UPM1 urophorphyrin methylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003913 [exp] 466 / 2e-165 AT5G40850 482 / 2e-171 urophorphyrin methylase 1 (.1.2) Lus10005047 [exp] 422 / 4e-148 AT5G40850 501 / 7e-179 urophorphyrin methylase 1 (.1.2) Lus10027819 [exp] 420 / 2e-147 AT5G40850 497 / 1e-177 urophorphyrin methylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G226900 [exp] 393 / 1e-136 AT5G40850 500 / 1e-178 urophorphyrin methylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10037476 pacid=23167059 polypeptide=Lus10037476 locus=Lus10037476.g ID=Lus10037476.BGIv1.0 annot-version=v1.0 ATGGGTTTGATGTCGGGGATGTTTGTTAGCTGCTTTCTTCCTAATTCTCCATCACCAACCTCTTCTTCCAAGGTGACTGACGATTTCGTCGTTCTCGATG ATCAGAAATCCTCGCCGCCGGCAACCAAGATGACGACCAAGTCGGAGCATAATTCCCCTCCGCCGATCTTGCTGCCGGAGCTGAAGAGGCTGCTTCAGGT GCTCAAGGAAAAGAGGCGGAAAGAAGAAGATGATCGGAAATGTGGCGGGAGTGTGTTCTTGGTTGGTACTGGACCCGGAGACGCTGATCTGTTGACGATT AAAGCTCTGAAAGCGATTCAAAAGGCTGATCTTCTGCTGTATGATCGATTGGTGTCGAATGATGTGCTTGATTTGGTTGGTGATGGTGTCAGGTTGCTGT ACGTTGGCAAGACTGCTGGATACCACAGCAGAACTCAAGAGGAGATACACGAATTGCTGCTGAGCTTTGCTGAAGCTGGTGCCACTGTTGTCAGGCTCAA AGGAGGGGATCCTCTGGTGTTTGGTAGAGGTGGGGAGGAGATGGATTTTCTACAAAGGCAAGGGATTCATGTCAAGGTCATTCCAGGCATCACAGCTGCT TCAGGGATAGCAGCGGAATTGGGAATTCCGTTAACACACCGGGGGGTCGCGAACAGTGTCAGGTTCCTAACGGGGCATTCACAGAAAGGAGGAACAGATC CACTATTCGTTGCGGAAAATGCAGCCGATCCTGATTCGACTCTAGTGGTTTACATGGGGTTAGCCACGCTCCCGTCGCTCGCTTCGAAATTGATCCACCG CGGTTTACCCTCGAACATGCCAGCAGTTGCGGTCGAGAGAGGAACCACACCACAGCAGCGCATGGTCTTTGCACAACTGAAGGATCTTGCTGATCGAATT TCGGCAACCGGATTAGTGTCTCCTACATTGATAATAATCGGGAAGGTTGTTGCACTTTCGCCGTTCTGGTCGTGTCCTTCTGCTGCCGAATCTGTTTCGC TGGTTGGTGCCGTTTAG
AA sequence Show only first row Show all	>Lus10037476 pacid=23167059 polypeptide=Lus10037476 locus=Lus10037476.g ID=Lus10037476.BGIv1.0 annot-version=v1.0 MGLMSGMFVSCFLPNSPSPTSSSKVTDDFVVLDDQKSSPPATKMTTKSEHNSPPPILLPELKRLLQVLKEKRRKEEDDRKCGGSVFLVGTGPGDADLLTI KALKAIQKADLLLYDRLVSNDVLDLVGDGVRLLYVGKTAGYHSRTQEEIHELLLSFAEAGATVVRLKGGDPLVFGRGGEEMDFLQRQGIHVKVIPGITAA SGIAAELGIPLTHRGVANSVRFLTGHSQKGGTDPLFVAENAADPDSTLVVYMGLATLPSLASKLIHRGLPSNMPAVAVERGTTPQQRMVFAQLKDLADRI SATGLVSPTLIIIGKVVALSPFWSCPSAAESVSLVGAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10037476 [exp]	0	1
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	2.4	0.9748
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	5.6	0.9797
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	14.7	0.9741
					Lus10018893 [exp]	15.7	0.9626
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	17.4	0.9740
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	19.3	0.9709
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	23.9	0.9724
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	26.2	0.9678
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	26.5	0.9706
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	28.8	0.9685

Compare expression of checked genes

Lus10037476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.