Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42850 160 / 9e-52 Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023026 [exp] 258 / 1e-90 AT5G42850 161 / 4e-52 Thioredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225500 [exp] 222 / 3e-76 AT5G42850 171 / 4e-56 Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF06110 [flax] [poplar] DUF953 Eukaryotic protein of unknown function (DUF953)
Representative CDS sequence Show only first row Show all	>Lus10037477 pacid=23167181 polypeptide=Lus10037477 locus=Lus10037477.g ID=Lus10037477.BGIv1.0 annot-version=v1.0 ATGACTGTCAAAATTTTGGACGCGACGGTGGCGAGCTTCAACGAGGTGTTCGAGAAGTTCAAAGCAGAGTCGCCGAAATTCAAATCCAACCTCATCCTCT TCCTCGCCGACAACGATCCGTCCACCAGTCTCAGCTGGTGCCCAGATTGCGTGAGGGCGGAGCCGGTGATACAGAAGAAGCTGGAAGCTTCCGGCGATGA CGTGGCGCTCCTCCGAGCTTACGTTGGGGACAGACCCACTTGGAGGAACCCACACCACCCTTTGAGGGTGGATTCGAAGTTCAAGCTCACTGGTGTCCCG ACTCTGATCCGCTGGGAGAATGATGCTGTTAAAGGAAAGCTTGAGGATCATGAAGCTCACCTTGAACGCAAAATCGATGGGCTTCTATCCACTACCGAGT AA
AA sequence Show only first row Show all	>Lus10037477 pacid=23167181 polypeptide=Lus10037477 locus=Lus10037477.g ID=Lus10037477.BGIv1.0 annot-version=v1.0 MTVKILDATVASFNEVFEKFKAESPKFKSNLILFLADNDPSTSLSWCPDCVRAEPVIQKKLEASGDDVALLRAYVGDRPTWRNPHHPLRVDSKFKLTGVP TLIRWENDAVKGKLEDHEAHLERKIDGLLSTTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42850			Thioredoxin superfamily protei...		Lus10037477 [exp]	0	1
AT4G13200			unknown protein		Lus10022803 [exp]	1.0	0.8768
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	4.7	0.8468
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	4.8	0.7756
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10019314 [exp]	5.5	0.7639
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	6.5	0.8389
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	7.5	0.8188
AT4G39235			unknown protein		Lus10004160 [exp]	7.7	0.8247
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	8.2	0.7595
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	8.5	0.8308
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	8.9	0.8044

Compare expression of checked genes

Lus10037477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.