Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59550 308 / 2e-94 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G16270 150 / 3e-37 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT5G40840 105 / 3e-23 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 87 / 1e-17 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 57 / 5e-08 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023028 [exp] 1240 / 0 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10026862 [exp] 152 / 9e-38 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 135 / 4e-32 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10041587 [exp] 101 / 1e-21 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10022338 [exp] 100 / 1e-21 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10020233 [exp] 99 / 3e-21 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225600 [exp] 361 / 2e-113 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.010G178600 [exp] 155 / 8e-39 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 152 / 7e-38 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.017G067400 [exp] 114 / 7e-26 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 49 / 1e-05 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10037478 pacid=23167340 polypeptide=Lus10037478 locus=Lus10037478.g ID=Lus10037478.BGIv1.0 annot-version=v1.0 ATGTTTTACTCACAGACATTTCTAGCTCGGAAGGGTCCACTCGGGACAGTATGGTGCGCCGCTCACTTGCAACACAGGCTCAAGAAATCTCATTACACTT CCACCGATATCAATTCAGTTGTTGAGTGTATAATGAATCCAGAAGTTCCCATTGCACTAAGAATGTCAGGGCACCTTCTGCTGGGAGTTTCTCGTATATA CTCGAAGAAAGTCGATTATCTCTTGCACGACTGTAATGTACTAGTGATTGGCTTGAAGAAGGCATTGGTTGCCACAGATATCAATTTGGCTGAGAATGAT CGAACGGCTGCGTTTGATTCAGTCACCTTGCCGCAAATTTTTAACCTTGACGATGTTGAGATCAACTATGACTCCTTCTCTGATGGGTCTCCTGACAGAA ATCTCAAGAGTCGTGAAGAGATAACACTTACAGATCAAATTCCTACTGGTGTAGACCCATTTGTCGCCGTCACTTTTGATGATGACTTGTCAGATGATGG TTCACCTTCACGGCAGGCTGATGATTTGGGAACTATACCAGGAATGCATGACACCTTTCCACCATTCACATCTATCGATGACTTTGATGGAAATCATGAA AGCTTTGTTCCAAGCAATCAGACAGAAGTCTTGCATACTGAAACTGAAACAGCGTTGCAAGACACTGGTCCAACTAATCAGACTGAAGCTGGCACAAGTG ATCATACCGATGTACATACTGAGATTAATGAGTCTGGACAAAGCAATGTGACCATAAATCTTGGTTCCAAGGATACTGACAACAACGATGACTCCTCTCC TGATTTCGGAATCTTGCGTGATGCTACCCATGATTCCGGTCCGGTAAGACTTCCTAATCTGTCTCCTATCTGGGAAAAGGATGCTACTGATGACACAAGC ATCCTTTCGGAGCAAAATTTGCTCGATAAGGACATTACTACTGATCCTATCCCAAATGAGCCTTCCTCGTTTCAACTTCCGCCACATTCAGAACCTCCGA ATTCTCCTCCTTCCGGAGGAGATCCACTGTTTTCCAGTCCAAATTCACCACCTGGCGAGTCAACCCCTGGGCTTCATGTTGCAGCTTCAACACCACCTGT TCAGCAACCAGAGCCACCTGCTCAGCAACTTCGGCCGAGGGGAATAAAGAGAAAGTACTTTGATGAAGTCACAGTCTTGACTAACAATTATATCAAGAGG CGCTTAGAAAGTTCTACTGGGTTGTTGCGCACCAAGAGGAATGCACCTTCTTCTTTGGATATCTGGAGGCAGAACAAGAGATTGAAGAAGGATCGAGTTT TCCACGAACCATTGATAACTGGGATGTCCTCTGTTTTGAGTAGCTTCTTTGAGGAGGGCCATGATTTCGTAAAGCACCATGCGATTCTTCACGAGGAGGA AGGTACAACGGAGACTCAAGGCCGAACATCTCCTGTTCGAGATGATGTCGTAACTCCTGTGAATGTAGTAACTCCTTCTGCTCCTGTAGTTGAGACCGTC TTGGAGCCAACAGATGGGAATCCTTTGGTCCGGGAGGACATGGACAATGATTCACCTGAAGTTATCCGGAATGCTGGAAGCCACCATCAAGATAATGATC GACCTGAGATTCCGGATTCGCCTATCCAGCATTCGCCTATTCATAGACGGGATGATGATGACTCGACACCTAGCCCCAGGAACTTTCAATCAACCAAAGA GACTCTTGCAACAGGGCAGACTTCTGGAAGTGGAAATCAGCAGACAGTAGATGACTTTACCACCTCGATAGGGACGTACATTTCCGGATTGATGACTCCG AGGACGAATAATGATGATGATGATCCTTTTTTTGCGGAGGACACTCAGCTTTCTCATATACTTGAATTGAGGGAAAGCCCTGAAATGGAAGATTATTCTC CTGAAGCAGATAACACACCAGCAGGATCCTCAAGGAAAAGCGGTAAAGGAGGTCATCAGTTGTCTGGTAGAACAAGGGCTGTAGCTCAGTATCTGGAAAG ACGAACTCCAATCACTCCGAGAATGGACGACCCTTCTAAAGAAATCAGTCTCAACCAGATCTTACTAGGGAAACCAAGAAAGCTCTGTGCCAGAATGTTC TATGAAACTCTGGTTCTGAAGAGCCATGGAGTTGTGGAAGTGGAAAGAGAGGCTCCACAGGAAAGCATCCGTTTGAACTTTGATGTACAGCAAGACGAGC CGTACGGTGACATTCTTTTGAAGCTCCGTCGGGTATAA
AA sequence Show only first row Show all	>Lus10037478 pacid=23167340 polypeptide=Lus10037478 locus=Lus10037478.g ID=Lus10037478.BGIv1.0 annot-version=v1.0 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDINSVVECIMNPEVPIALRMSGHLLLGVSRIYSKKVDYLLHDCNVLVIGLKKALVATDINLAEND RTAAFDSVTLPQIFNLDDVEINYDSFSDGSPDRNLKSREEITLTDQIPTGVDPFVAVTFDDDLSDDGSPSRQADDLGTIPGMHDTFPPFTSIDDFDGNHE SFVPSNQTEVLHTETETALQDTGPTNQTEAGTSDHTDVHTEINESGQSNVTINLGSKDTDNNDDSSPDFGILRDATHDSGPVRLPNLSPIWEKDATDDTS ILSEQNLLDKDITTDPIPNEPSSFQLPPHSEPPNSPPSGGDPLFSSPNSPPGESTPGLHVAASTPPVQQPEPPAQQLRPRGIKRKYFDEVTVLTNNYIKR RLESSTGLLRTKRNAPSSLDIWRQNKRLKKDRVFHEPLITGMSSVLSSFFEEGHDFVKHHAILHEEEGTTETQGRTSPVRDDVVTPVNVVTPSAPVVETV LEPTDGNPLVREDMDNDSPEVIRNAGSHHQDNDRPEIPDSPIQHSPIHRRDDDDSTPSPRNFQSTKETLATGQTSGSGNQQTVDDFTTSIGTYISGLMTP RTNNDDDDPFFAEDTQLSHILELRESPEMEDYSPEADNTPAGSSRKSGKGGHQLSGRTRAVAQYLERRTPITPRMDDPSKEISLNQILLGKPRKLCARMF YETLVLKSHGVVEVEREAPQESIRLNFDVQQDEPYGDILLKLRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	0	1
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	1.0	0.9750
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	3.0	0.9522
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	6.0	0.9591
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	9.0	0.9185
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	9.5	0.9375
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	9.8	0.9306
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	10.6	0.9519
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	11.7	0.9303
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	11.8	0.9487
AT2G37960			unknown protein		Lus10021116 [exp]	12.2	0.9449

Compare expression of checked genes

Lus10037478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.