Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48060 865 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 852 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 798 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 792 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 791 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 744 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 683 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 655 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 630 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G74720 615 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023823 [exp] 858 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 854 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 814 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 812 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 751 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 743 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 675 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 637 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 619 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271400 [exp] 947 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 937 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 882 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 867 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 806 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 805 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 769 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 766 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 764 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 760 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10037479 pacid=23167196 polypeptide=Lus10037479 locus=Lus10037479.g ID=Lus10037479.BGIv1.0 annot-version=v1.0 ATGTTTGTAGCGGCGGAGCCTTTCGAGGAGCAGGTGATCGTCACCGTGGAGGACAGAGTTCATCCGTCGAAAGACGACGTGCTCGGGAAGATTACTTTCC CGGTGGCGGCATTCGAGAAGCGGATGGATCATCGCCCTGTTCATTCGCGGTGGTTCAATCTGGAGAAATTCGGATTCGGAGGATTGGAAGGTGATCGGAG GAAGGATATGAAATTCGCGAGCAGGATTCACCTTAGAGTTTGTTTGGAAGGAGGTTACCATGTGATGGACGAATCGACTATGTACATCAGCGATCAGAGA CCGACGGCGAGGCAGCTTTGGAAGCAGCAGCCTGTCGGAATATTGGAGGTCGGAGTTCTGGGAGCTCAGGGGATTCTTCCGATGAAGATGAAAGACGGCA GGGGGAGTACTGATTCGTACTGTGTAGCGAAGTACGGACAGAAATGGGTTCGTACCCGAACCGTAATCGACTCTTTTAACCCTAAATGGAACGAGCAGTA CACTTGGGAAGTGTATGACCCGTGCACCGTGATCACTCTAGGAGTGTTCGACAACTGTCATTTGGTTAACGAGAAATCGGTTCGAGACTCGAGGATCGGG AAGGTCAGGATTCGGCTTTCGACGTTAGAAGCGCACCGGACCTATACAAATTCCTACCCGCTCCTGGCGCTGCATTCGAGCGGGGTGAAGAAGATGGGCG AGCTTCATCTCGCGATTCGGTTCACTACATTGTCACTAGCCAACTTGATATTTGCGTACGGACAACCGATTCTGCCGAAGATGCACTACCTGCATCCGTT AACGGTCAACCAAGTCGAAAGCCTAAGGTACCAAGCGATGAACATCGTAGCAGTGAGGCTAGGCAGGGCAGAGCCGCCGCTCAGGAAAGAAGTCGTCGAG TACATGCTAGACGTGGATTCGCACATGTGGAGCATGAGGAGGAGCAAGGCCAACTTCTTCCGGATCATGTCATTGGTATCGGGGGCAGTCTCGATGAGTA AGTGGTTAGACGACATTTGCCAATGGAGGAAACCCGTGACATCAGTATTAGTACACGTCCTTTTCCTGATACTAATCTGGTACCCGGAGCTGATCCTCCC GACAACGTTCCTCTACATGTTCCTGATTGGGATCTGGAACTACAGGTTCCGGCCTAGGCACCCGCCTCACATGGACACGAAGTTATCATGGGCGGAGGCG GTGAGCCCCGACGAGCTCGACGAGGAGTTCGACACGTTCCCTACTTCGAGGGCTCACGATCTTGTCAGGATGAGGTACGACAGGCTCAGGAGCATTGCCG GCAGGATACAGTCCGTGGTGGGGGATGTCGCGACGCAAGGGGAGAGGTTTCAGTCACTGCTGAGCTGGAGGGACCCCAGAGCAACTAGTTTGTTCGTAGT GTTTTGCCTTTGTGCGGCTATAGTGCTTTATGTGACGCCGTTTAGGGTGGTTGCTATGGGTTCGGGTTTGTACTACTTGAGGCACCCTAGGTTCCGTACC AAGCTTCCTTGTGTGCCAAGCAATTTCTTCAAGAGATTGTCTGCTAGAACCGATAGCTTGCTCTAG
AA sequence Show only first row Show all	>Lus10037479 pacid=23167196 polypeptide=Lus10037479 locus=Lus10037479.g ID=Lus10037479.BGIv1.0 annot-version=v1.0 MFVAAEPFEEQVIVTVEDRVHPSKDDVLGKITFPVAAFEKRMDHRPVHSRWFNLEKFGFGGLEGDRRKDMKFASRIHLRVCLEGGYHVMDESTMYISDQR PTARQLWKQQPVGILEVGVLGAQGILPMKMKDGRGSTDSYCVAKYGQKWVRTRTVIDSFNPKWNEQYTWEVYDPCTVITLGVFDNCHLVNEKSVRDSRIG KVRIRLSTLEAHRTYTNSYPLLALHSSGVKKMGELHLAIRFTTLSLANLIFAYGQPILPKMHYLHPLTVNQVESLRYQAMNIVAVRLGRAEPPLRKEVVE YMLDVDSHMWSMRRSKANFFRIMSLVSGAVSMSKWLDDICQWRKPVTSVLVHVLFLILIWYPELILPTTFLYMFLIGIWNYRFRPRHPPHMDTKLSWAEA VSPDELDEEFDTFPTSRAHDLVRMRYDRLRSIAGRIQSVVGDVATQGERFQSLLSWRDPRATSLFVVFCLCAAIVLYVTPFRVVAMGSGLYYLRHPRFRT KLPCVPSNFFKRLSARTDSLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	0	1
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	4.4	0.9408
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	5.3	0.9308
AT1G68430			unknown protein		Lus10003042 [exp]	5.5	0.9207
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	6.0	0.9140
AT1G68430			unknown protein		Lus10034103 [exp]	7.2	0.9136
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	7.5	0.9197
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	8.2	0.9257
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	9.1	0.8823
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	9.3	0.9303
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	11.0	0.8965

Compare expression of checked genes

Lus10037479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.