Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06850 183 / 2e-53 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 176 / 8e-51 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 176 / 9e-51 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G48060 176 / 3e-50 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 160 / 5e-45 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 155 / 2e-43 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G22610 153 / 2e-42 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 144 / 3e-39 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 140 / 6e-38 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 132 / 4e-35 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015709 [exp] 278 / 3e-93 AT5G48060 371 / 2e-120 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 189 / 3e-55 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 188 / 6e-55 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 184 / 1e-53 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 183 / 4e-53 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10031816 [exp] 176 / 2e-52 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 176 / 8e-51 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 156 / 3e-43 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009460 [exp] 152 / 2e-42 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271400 [exp] 202 / 1e-59 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 201 / 1e-59 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 187 / 1e-54 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 185 / 8e-54 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 179 / 1e-51 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 179 / 1e-51 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 178 / 1e-51 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 177 / 4e-51 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 174 / 9e-50 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 167 / 4e-47 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10037480 pacid=23167122 polypeptide=Lus10037480 locus=Lus10037480.g ID=Lus10037480.BGIv1.0 annot-version=v1.0 ATGCACCATCTTGCTGCTGCTGCTACTTCTGCTAACAGTGCAGCCTCAGGGCAGCACTACCGCGGCCGCAACAACGAAGATGATGATGATGATAACTACA TCTTGAAGGACACCAATGTACATCGAGGGCAGAGGTTGTGGCAATCTGGAAGATCAGGATTCAGTTCGGCGTCCGCTACGACGAAATTCGACCTGGTGGA GCAAATCTCGTACCTTTATGTCCGAGTAGTGAAAGCCAAAGACCTCCCTCCAGCTTCCTCCATCGCCAACACCTGCGATCCGTACGTCGAAATCAAACTC GGCAACTACAAGGGAAGAACAAAGCATTTCGAGAAGAAATCAAATCCTGAATGGAACCAGGTATTCGCCTTCTCCAAGGACAGAATCCAATCCTCTGTTC TTGAAGTCTACGTAAAGGACAGAGAGATCAAGGGAGACGATTACCTCGGCAGAGTCACCTTCGATTTGAACGAAATCCCCACCAGAGTCCCGCCGGACAG TCCACTCGCAGCTCAGCGACAGCGCCCGCGCCGCCACCCCAGCGCCCCTGCCGGGCCCGCAGCGGCGGCCACGGCGAGATCATGCTGGTCGTTTGGATGG GGACGCAAGCTGATGAAGCGTTTCCGGAAGCTTGGAACGCCGATTCCGCCGGAATCAGCGGAGGCGCCGCCGTCGGAGTTAGGTCAAAAGTCTATGTCTC TCCCAAGCTGTGGTACGTCCGTGTGA
AA sequence Show only first row Show all	>Lus10037480 pacid=23167122 polypeptide=Lus10037480 locus=Lus10037480.g ID=Lus10037480.BGIv1.0 annot-version=v1.0 MHHLAAAATSANSAASGQHYRGRNNEDDDDDNYILKDTNVHRGQRLWQSGRSGFSSASATTKFDLVEQISYLYVRVVKAKDLPPASSIANTCDPYVEIKL GNYKGRTKHFEKKSNPEWNQVFAFSKDRIQSSVLEVYVKDREIKGDDYLGRVTFDLNEIPTRVPPDSPLAAQRQRPRRHPSAPAGPAAAATARSCWSFGW GRKLMKRFRKLGTPIPPESAEAPPSELGQKSMSLPSCGTSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06850			C2 calcium/lipid-binding plant...		Lus10037480 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	2.2	0.9208
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	4.6	0.8631
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	5.1	0.8953
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	5.5	0.8494
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	8.1	0.8921
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	9.2	0.8180
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	9.4	0.8613
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	10.0	0.8903
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	10.7	0.8879
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	11.0	0.8360

Compare expression of checked genes

Lus10037480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.