Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52140 1774 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) AT4G28080 308 / 3e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15290 302 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G01320 300 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015708 [exp] 2506 / 0 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10030259 [exp] 314 / 2e-87 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004009 [exp] 311 / 6e-86 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036604 [exp] 309 / 3e-85 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035822 [exp] 295 / 5e-81 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065300 [exp] 1988 / 0 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.001G271200 [exp] 1981 / 0 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.018G102500 [exp] 308 / 5e-85 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G180100 [exp] 307 / 8e-85 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031000 [exp] 303 / 1e-83 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G170900 [exp] 301 / 5e-83 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G098600 [exp] 300 / 1e-82 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05303 [flax] [poplar] DUF727 Protein of unknown function (DUF727)
Representative CDS sequence Show only first row Show all	>Lus10037481 pacid=23167022 polypeptide=Lus10037481 locus=Lus10037481.g ID=Lus10037481.BGIv1.0 annot-version=v1.0 ATGGCTGGGAAATCTAACAAGGGGAGGAATAAGAGAGGCACATCTACTGCTGTCAATGCTTCTGATTCAGCAGTGTCGTCTACTGTTGTGAATGCTTCTG ATTCGGTAGTGTCGTCTACTGCTCCTGTGAAGGACGCTGTCACTGTTCTGGAGCCTGCCGAGATTGAGAAGACTAATGGAGTAGCCGTTGTTAATGAACC TTCTGATAATAAGCCGGAGGGTAAGAAGCCTGAATCTGCTGTTTATAAGCCAGACGTTGAGGAGCTTCAATCTACTGATGCTGCGGGGGAACCCAAACAG CAAGGGGATCTTCATCTCTTTGCTGTCCCTGTGAAAACACAGAGTGGGGAGAAGCTTGAGCTGCAATTGAACCCAGGGGATTCGGTCATGGACATAAGAC AGTTCCTTCTTGATGCCCCTGAGACATGCTTCTTCACTTGCTATGATTTGTTGCTCCACACAAAGGATGGGTCTTCTCATCAACTGGAAGATTATAATGA AATTTCTGAAGTAGCTGATATTACCACGGGTGGTTGCTCTTTGGAGATGGTTGCTGCCCCGTACGACGACAGATCGATCAGGGCTCACGTCCATCGCACC AGAGAATTAATTTCACTTTCTACTCTTCACGCCTCGCTGTCTACTTCACTTGCACTGGAGTACGAGGCAGCACAAAATAAGGCTGTGGCTTCAGATGCAG TGAAACCTGAGATTCCTGAGCTGGATGGACTAGGATTCATGGAAGATGTCTCAGGTTCCCTTGGTAAATTGCTATCATCGCCATCTAAGGAGGTTAAATG TGTGGAGAGTGTTGTGTTCTCATCATTCAATCCTCCCCCAAACTATAGGAGGCTTGTTGGAGATCTCATCTACTTGGATGTGGTGACATTGGAGGGTAAC AAATTTTGTATTACCGGATCAACAAGAGCATTCTATGTTAATTCTAGTGCTGGCAATGTTCTTGACCCAAACCCTGGAAAATCTACTTTTGAAGCAACCA CCCTTATTGCTTTGTTACAAAAGATAAGCTCAAAGTTCAAAAAAGCTTTTCGTGAACTCCTGGAGAAGAAGGCATCGGCGCATCCTTTTGAAAATGTTCA GTCTCTTTTACCACCAAATTCTTGGCTAGGATTGCACCCTGTACCTGACCACAGGCGGGATGCAGCCAGGGCAGAAGATGTAATAAACCTTTCATATGGA AGTGAGTTAATTGGAATGCAAAGAGATTGGAATGAGGAGTTGCAATCTTGTAGGGAATTCCCCCATACAAGTCCTCAGGAAAGGATCTTGCGGGATAGGG CTCTCTACAAAGTCACTTCTGATTTTGTTGATGCAGCAGTTAGTGGTGCTATTGGAGTCATCAGTAGATGTATACCTCCTATAAACCCAACGGATCCAGA GTGCTTCCATATGTATGTCCACAACAACATATTTTTTAGTTTTGCCGTCGATGCTGATCTTGAGCAAGTGTCCAGGAAACGTACTTCAGATATTAATGTA AAGAAGGATAACAATTCTACATCTTCATCTGAGAAGGTCCCCAATAATGTGTCACATGGGAATGATAGTGTTGCCTCTGTGGAAAAACCCGATGGATCTA TCAGTCTAGAAAGTAATGGTTCAACTGAGTTGACTTCTCCAGAGACACAATTGGCTGAGAGTGAGCAGGCAACATATGCTTCTGCCAATAATGATTTGAA GGGAACAAAAGCTTACCAGGAAGCTGATATCTCTGGTCTTTATAATCTCGCCATGGCGATAATTGACTATAGAGGACACCGAGTTGTTGCTCAGAGTGTT TTACCTGGAATCCTTCAAGGTGATAAGTCAGACTCTCTTCTGTATGGTTCTGTTGACAATGGCAAGAAAATATGCTGGAATGAAGATTTCCACTCTAAGG TAGTGGAAGCTGCAAAGCGCCTTCACCTAAAGGAGCATTCGGTGCTGGATGGATCTGGAAATAGTTTCAAATTAGCTGCACCAGTAGAATGCAAGGGCAT TGTTGGCAGCGATGACCGGCATTATCTCTTAGACTTGATGAGAGTTACTCCCCGTGATGCTAACTACACTGGACCAGGTTCCAGATTCTGCATTTTGAGA CCGGAACTGATTTCTGCCTTTTCGCAAGCTGAAGCTCTAGAGAAATCAAAGGCCAAGTCCAAAACTGAACCTGAGGCTCCTGCTACTGAAAATGCTACAG AAGTTGCTGTCTCGGACGAAACGGAAAAATCTGCAACCTCTACTGACAATCAGGAGTTAGCTGAGGAGAAAACTGATACTGCTTTTGCACAACCTGCTGT TCCTGCTGTGAGCTCTGAATTGGATGACGAAATACTTTTTAATCCTAATGTGCTCACTGAGTTCAAATTGGCAGGGGACCCAGAGGAAATCACAAAGGAT GAAGAAAATGTGAGAAGAGTTAGTTCATTTCTAGCTGATACTGTGCTTCCAAAGTTTATTCAAGATCTTTGCACTCTTGAAGTGTCACCTATGGACGGTC AGACCCTTACTGAGGCACTTCATGCTCATGGAGTCAATGTTCGATATCTGGGACGGATTGCTGAGGGGACAAAACATTTACCTCACCTGTGGGATCTTTG CTCAAATGAGATTGTAGTTAGATCTGCAAAGCATGTTCTCAAGGATTTGTTGAGAGATGCAGAAGATCACGACCTTGGTCCAGCAATCTCACATTATTTC AATTGTTTGTTTGGAAATTGCGAAGCTGTTGGCACAAAAGCTTCTACTAATAGTTCCCTGACAAAATCCCCAAAGAAGGAATCTTCTGGAAAATCTAAAG GCCAAACAAGGGTGAAAGGAGCACCTAGGAAGAATCAATCTTCGTATTTTAATATTGGTTCAGAAACACTATGGTCTGAGATACGCGAGTTTGCAAAGCT CAAATACCAGTTTGACTTGCCAGAAGATTCAGCGGTGCGCGTTCGGAAAGTCTCCGTTATCCGCAATCTTTGCCAGAAGGTGGGTATCACTATGGCAGCT CGGAAGTATGACTTCAATGCTGCTACACTGTTCCAAACATCAGATATTTTGGATCTAAGACCCGTGGTGAAGCATTCAGTTCCAGTTTGCTCTGAAGCAA AAGAGCTTGTAGAGACCGGGAAGGCGCAATTAGCAGAGGGCATGCTAAGTGAAGCCTATACATTATTCTCCGAGGCTTTCTCCATTCTTCAACAGGTTAC CGGGCCAATGCATCGCGAGGTTGCCAACTGCTGCCGGTACCTTGCTATGGTTCTGTACCATGCTGGAGATATGGCTGGAGCAATAATTCAGCAGCACAAG GAGTTGATTATAAACGAACGTTGCCTCGGCCTAGATCACCCTGACACTGCTCACAGGCATTTTTATTTTCTTCTCACCTACGGGAACATGGCTCTCTTTT ACCATGGCCTTAACCAAACAGAACTCGCACTGAGGCACATGTCTCGGGCATTGCTCTTATTGAGTTTGTCGTCCGGCCCTGATCATCCTGATGTTGCAGC GACATTTATAAACGTTGCTATGATGTTCCAGGACATCGGGAAGATGAACACAGCTCTTCGGTATCTGCAAGAGGCCTTGAAGAAGAACGAGAGGTTGTTA GGCCAAGAGCATATTCAGACCGCTGTATGCTACCACGCTTTGGCTATCGCCTTCAATTGTATAGGCGCCTTCAAGCTATCACATCAGCATGAGAAGAACA CGTATGATATTCTCGTCAAACAGCTTGGCGAGGACGACTCTAGAACACGCGATTCTCTAAATTGGATGAAGACCTTCAGGACGCGGGAGCTTCAGATGAA TGCTCAGAAGCAGAAAGGCCAGGCATTGAATGCAGTTTCTGCCCAGAAGGCAATGGACATCTTGAAGGCTCATCCAGACCTCCTGCAAGCATTCCAAGCA GCAGCAACTGCTGGAGCATCAGGGAGCGGTGGCAATCCATCCGTAACCAAATCGATCAATGCCGCACTGGTGGGTGATACCCTTCCTCGAGGAAGAGGGG TCGACGAAAGGGCCGCCCGTGCTGCCGCAGAAATCAGGAAAAAGGCCGCCGCTAGAGGGCTCTTGATCAGGCCACACGGTGTTCCGGTCCAAGCCGTGCC ACCTATGCAGCAGCTCATGAATCTCATGACGGCACCTGATGCCGTCGTGGATGGTGAGAAAACCGAGGCGAACGGCGCAGCCCCGGTAGAAGGACAAGAA CAGCAGCAGCAGCAGGCTCCAGTTGGTCTAGGCAAAGGGTTGGCATCGTTGGATAATAAGAAAGGGAAGACAAAATCTTCTCATGCTGCAGCCTGA
AA sequence Show only first row Show all	>Lus10037481 pacid=23167022 polypeptide=Lus10037481 locus=Lus10037481.g ID=Lus10037481.BGIv1.0 annot-version=v1.0 MAGKSNKGRNKRGTSTAVNASDSAVSSTVVNASDSVVSSTAPVKDAVTVLEPAEIEKTNGVAVVNEPSDNKPEGKKPESAVYKPDVEELQSTDAAGEPKQ QGDLHLFAVPVKTQSGEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLLLHTKDGSSHQLEDYNEISEVADITTGGCSLEMVAAPYDDRSIRAHVHRT RELISLSTLHASLSTSLALEYEAAQNKAVASDAVKPEIPELDGLGFMEDVSGSLGKLLSSPSKEVKCVESVVFSSFNPPPNYRRLVGDLIYLDVVTLEGN KFCITGSTRAFYVNSSAGNVLDPNPGKSTFEATTLIALLQKISSKFKKAFRELLEKKASAHPFENVQSLLPPNSWLGLHPVPDHRRDAARAEDVINLSYG SELIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDFVDAAVSGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDADLEQVSRKRTSDINV KKDNNSTSSSEKVPNNVSHGNDSVASVEKPDGSISLESNGSTELTSPETQLAESEQATYASANNDLKGTKAYQEADISGLYNLAMAIIDYRGHRVVAQSV LPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVVEAAKRLHLKEHSVLDGSGNSFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTGPGSRFCILR PELISAFSQAEALEKSKAKSKTEPEAPATENATEVAVSDETEKSATSTDNQELAEEKTDTAFAQPAVPAVSSELDDEILFNPNVLTEFKLAGDPEEITKD EENVRRVSSFLADTVLPKFIQDLCTLEVSPMDGQTLTEALHAHGVNVRYLGRIAEGTKHLPHLWDLCSNEIVVRSAKHVLKDLLRDAEDHDLGPAISHYF NCLFGNCEAVGTKASTNSSLTKSPKKESSGKSKGQTRVKGAPRKNQSSYFNIGSETLWSEIREFAKLKYQFDLPEDSAVRVRKVSVIRNLCQKVGITMAA RKYDFNAATLFQTSDILDLRPVVKHSVPVCSEAKELVETGKAQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIIQQHK ELIINERCLGLDHPDTAHRHFYFLLTYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMFQDIGKMNTALRYLQEALKKNERLL GQEHIQTAVCYHALAIAFNCIGAFKLSHQHEKNTYDILVKQLGEDDSRTRDSLNWMKTFRTRELQMNAQKQKGQALNAVSAQKAMDILKAHPDLLQAFQA AATAGASGSGGNPSVTKSINAALVGDTLPRGRGVDERAARAAAEIRKKAAARGLLIRPHGVPVQAVPPMQQLMNLMTAPDAVVDGEKTEANGAAPVEGQE QQQQQAPVGLGKGLASLDNKKGKTKSSHAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	0	1
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	2.4	0.9166
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	4.5	0.9193
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	4.8	0.9248
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	5.0	0.8816
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	5.8	0.9203
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	8.8	0.9197
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	10.2	0.9135
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	11.1	0.8768
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	11.2	0.9146
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	13.7	0.8973

Compare expression of checked genes

Lus10037481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.