Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48020 592 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015707 [exp] 742 / 0 AT5G48020 590 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 51 / 6e-07 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025619 [exp] 47 / 1e-05 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10008564 [exp] 42 / 0.0005 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271100 [exp] 646 / 0 AT5G48020 593 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 49 / 3e-06 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G014454 [exp] 45 / 3e-05 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 45 / 6e-05 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037482 pacid=23167332 polypeptide=Lus10037482 locus=Lus10037482.g ID=Lus10037482.BGIv1.0 annot-version=v1.0 ATGGAGGTCCCGGTGATAGATCTGTCCCGGTACTTGGAGATCGCCGGCCAACTTACCACCGACGATCCGGCTAAACTCACCGCTCAATTGGATGAGCACG GCACTTGGCTCCTCGAGCTGTGCACGGAAGTGAGCCGAATCCTCAAGGAAACCGGTGCTTTAGTTGTCAAGGATCCTAGATGTAGCGCCGATGATAACGA TCGCTTCATCGATATGATGGAAAAGTACTTCGAAATGCCGGACGACTTCAAGCGGCTGCAGGAGAGACCTCACTTGCATTATCAGGTTGGGGTGACACCT GAAGGAGTAGAAGTGCCAAGAAGCCTGGTTGACGAGGAGATTCAAGAGAAGTTGAAGGAGATGCCTAAGGAGTTTCAGCCATCGTTTCCTAAAGGAGCTG ATCCCAAATGGAGATACATGTGGAGAGTAGGACCAAGGCCATCAAATACTCAGTTCAAGGAACTTAATGCAGAGCCTGTCATCCCTGAGGGATTCCCTGA ATGGAAAGATACCATGGACTCTTGGGGTCTCAAGATGATCTCAGCAATAGAGGCTGTTGCTGAAATGGCAGCTATAGGTTTTGGATTGCCCAAGGATGCA TTTACTTCTATTATGAAGCAGGGACCTCATCTTCTTGCTCCGACAGGGAGTGACCTCAGTCGCTACGGTGAGGAAGGCACTGTGTTTGCTGGGTATCATT ACGACCTCAACTTTCTCACAATTCACGGCCGAAGTAGATTCCCTGGCCTTAGCATTTGGCTAAGAAACGGCCAAAAGGTTGAAGTGAAGGTTCCTGTTGG ATGTCTCCTTATCCAAGCAGGGAAGCAGATAGAGTGGTTGACCGGTGGCGACTGCTTGGCCGGAATGCACGAGGTAGTTGTGACAAAGAGGACAACCGAG GCAATCAAATCAGCATCCGAGCAAAACCGCAGCTTATGGAGAGTATCCTCAACGCTTTTCTCGCACATAGCATCCGATGCAGTGTTGAAGCCTCTAGGCC ACTTTGCGGAATCTCCCGTGGCGAGCAAGTATCCGCCCCTGTACGCAGGAGAATTCGTCGAGCAGGAGCTTGCAGTTATCAATCTCAAGGGGAAGACAAC ATGA
AA sequence Show only first row Show all	>Lus10037482 pacid=23167332 polypeptide=Lus10037482 locus=Lus10037482.g ID=Lus10037482.BGIv1.0 annot-version=v1.0 MEVPVIDLSRYLEIAGQLTTDDPAKLTAQLDEHGTWLLELCTEVSRILKETGALVVKDPRCSADDNDRFIDMMEKYFEMPDDFKRLQERPHLHYQVGVTP EGVEVPRSLVDEEIQEKLKEMPKEFQPSFPKGADPKWRYMWRVGPRPSNTQFKELNAEPVIPEGFPEWKDTMDSWGLKMISAIEAVAEMAAIGFGLPKDA FTSIMKQGPHLLAPTGSDLSRYGEEGTVFAGYHYDLNFLTIHGRSRFPGLSIWLRNGQKVEVKVPVGCLLIQAGKQIEWLTGGDCLAGMHEVVVTKRTTE AIKSASEQNRSLWRVSSTLFSHIASDAVLKPLGHFAESPVASKYPPLYAGEFVEQELAVINLKGKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	2.0	0.9524
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	2.8	0.9511
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	6.0	0.9462
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	7.1	0.9239
AT1G31910			GHMP kinase family protein (.1...		Lus10012121 [exp]	7.7	0.9161
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	8.8	0.9298
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	9.4	0.9362
AT4G39900			unknown protein		Lus10024045 [exp]	9.5	0.9387
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	10.0	0.9187
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	10.7	0.9220

Compare expression of checked genes

Lus10037482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.