Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75040 205 / 5e-65 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75030 204 / 3e-64 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 202 / 7e-64 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 199 / 1e-62 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 190 / 6e-59 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 192 / 2e-58 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 191 / 2e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 189 / 2e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 189 / 3e-58 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 188 / 1e-57 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015705 [exp] 394 / 5e-139 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10032726 [exp] 201 / 3e-63 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10013561 [exp] 199 / 2e-61 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 194 / 2e-59 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10028448 [exp] 191 / 8e-59 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 189 / 1e-58 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023897 [exp] 183 / 3e-56 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 184 / 6e-56 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 185 / 7e-56 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241000 [exp] 207 / 1e-64 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.014G040700 [exp] 201 / 3e-63 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.005G112700 [exp] 199 / 5e-62 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 200 / 6e-62 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 196 / 2e-60 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 193 / 4e-60 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 192 / 1e-59 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 190 / 4e-58 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 185 / 6e-56 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G221700 [exp] 180 / 4e-55 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10037483 pacid=23167081 polypeptide=Lus10037483 locus=Lus10037483.g ID=Lus10037483.BGIv1.0 annot-version=v1.0 ATGGAACATTCTTCCCATGTCATCACCCTATTCCTCTTCTTGATTTTCATCTCTTCCTCATCGGTTTCCAATGGTGTGATTTTCACCCTCGAAAATCGGT GCAACACCACCATATGGCCCGCCACGCTCTCAGGAAGAGGTCCTCTACTCATCGACGGAGGCACAGAACTACCCCCCGGTGAGTCGATCACCTTCACCGT CCCAGCTCGATGGTCAGGACGAATCTGGCCCCGCACAGGGTGCAGTTTCCATTCCAACACCACCAACACCACAGGGGAGCCGGTGGCCAGCCACCCGTTG ATTTTCATCTCTTCCTCATCGGTTTCCAATGGTGTGATTTTCACCCTCGAAAATCGGTGCAACACCACCATATGGCCCGCCACGCTCTCAGGAAGAGGTC CTCTACTCATCGACGGAGGCACAGAACTACCCCCCGGTGAGTCGATCACCTTCACCGTCCCAGCTCGATGGTCAGGACGAATCTGGCCCCGCACAGGGTG CATTTTCCATTCCAACACCACCAACACCACAGGTACGGCAGTGAAATGCTCGACTGGCGACTGTGGTGGTGGGTTGTTGGAATGCAGGGGAGCCGGTGGC GAGCCACCAGCAACGATCGCCGAGTTCACACTCGACGAAGACATCGATTTCTACGATGTCAGCCTTGTCGACGGATTCAACATCCCCGTCTCTATATACC CTTCTGCAGGGACCGGATCAGACTGCAGGAAAGTCGAGTGCTTTACGGACCTGAACAAGAGGTGCCCGAAGGAACTGCAGGTGTTGGATGGAGGGAGCCG AGTCATGGCGTGTAAGAGTGCTTGCACCGCTTACAATACTCCCCAGTACTGCTGCACCGGGGAGTACGGAAGCCCTCAGAGCTGCAAGCCTACGGATTTC TCCAGGATGTTTAAGGACGCGTGTCCGAGCTATTACAGCTACGCTTACGATGATGCGACCAGTATCTTCACTTGTAGAAGAAAAGCCGATTATTTGATCA GATTCTGTTGA
AA sequence Show only first row Show all	>Lus10037483 pacid=23167081 polypeptide=Lus10037483 locus=Lus10037483.g ID=Lus10037483.BGIv1.0 annot-version=v1.0 MEHSSHVITLFLFLIFISSSSVSNGVIFTLENRCNTTIWPATLSGRGPLLIDGGTELPPGESITFTVPARWSGRIWPRTGCSFHSNTTNTTGEPVASHPL IFISSSSVSNGVIFTLENRCNTTIWPATLSGRGPLLIDGGTELPPGESITFTVPARWSGRIWPRTGCIFHSNTTNTTGTAVKCSTGDCGGGLLECRGAGG EPPATIAEFTLDEDIDFYDVSLVDGFNIPVSIYPSAGTGSDCRKVECFTDLNKRCPKELQVLDGGSRVMACKSACTAYNTPQYCCTGEYGSPQSCKPTDF SRMFKDACPSYYSYAYDDATSIFTCRRKADYLIRFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10037483 [exp]	0	1
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	3.5	0.9504
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	8.4	0.9318
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	9.9	0.9474
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	11.1	0.9464
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	15.7	0.9435
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	17.1	0.9411
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	17.2	0.9431
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	17.3	0.9328
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	17.9	0.9290
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	19.0	0.9408

Compare expression of checked genes

Lus10037483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.