Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 169 / 4e-49 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 167 / 4e-48 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05805 135 / 2e-36 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 130 / 1e-34 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 120 / 2e-31 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 117 / 2e-30 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 78 / 7e-16 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 77 / 2e-15 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 75 / 4e-15 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G50915 74 / 1e-14 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015704 [exp] 579 / 0 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031255 [exp] 159 / 4e-47 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 159 / 2e-45 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021023 [exp] 144 / 7e-38 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10025518 [exp] 138 / 2e-37 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026733 [exp] 117 / 2e-31 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10023829 [exp] 103 / 3e-24 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014726 [exp] 75 / 1e-15 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 77 / 3e-15 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064700 [exp] 243 / 1e-76 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 210 / 9e-65 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 211 / 2e-64 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G207200 [exp] 184 / 5e-54 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 181 / 5e-54 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 182 / 1e-53 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G150600 [exp] 142 / 7e-39 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 140 / 3e-38 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 126 / 9e-34 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 121 / 5e-32 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037484 pacid=23167174 polypeptide=Lus10037484 locus=Lus10037484.g ID=Lus10037484.BGIv1.0 annot-version=v1.0 ATGAGTATGATTTACAGTCCGAATCTGAAGTACCCAGATGGCGAATTGGGGATCAAGAACGGTTTCCAGCTGGATTATCATCAGCTTCCTCTGGATCTCA GCCCTAATTTCAGCAACGCTACTTACAATCAGCAGCTGCAGGGCAATAATTCAGGGCTGGCTCGTCTCAGATCCGCGCCGAGCTCATTCCTAGCGGATCT CGTCAATGGCGGCTCTTCTGATTCGATTGGATTCGACGATTTCCGATTCTTCCGGCCGCCGAGCCCCGACATCGACGCCATATTCGGTGAGTTGCAGGGC TTCGGAGAGGCAGCGGTGAAGAAGGAAGCTGCCGCCGATTCGGAAATCGGCAGTTATAATAATTTGGGGGGTGATCATACGACGTCGTCTTGTATTGATA CGACAACATTCAGCAGCGTTTTGGGACCTTCTTCTTCTTCGTTTGCTGCTGGTAGTGGTAATGGATCGAATCTAGCTCGACATAATAGCTCGCCAGCTGG ATTCTTCTCCAGCATCGTCGTTGAAAATGGGTTCCATGGAGTTGGGGAAGCCAATCCATCAACAAGGAGCAACAGTGGTAGTAAGTTAAGAAGGAGTACA CAGTTGCCTAAGATTTCTGAAATTGGGGAGGAGACCTTCCTTAGCACAACAAGTTCGAACTCCGGGAAAAGGCCTTATTCTTCATCTGTCAACATCTCAT GGGACAATGCTTCTTGGAGTACTGGAAACAAGAAACTAAAGCAGGATCGTCGCGACGATGATGATCTCGACTTGTTTGGACTGGACAATCTCCAGCAGCA GAATGGGGGAAGCCGGTTGAGTCACCATTTAAGCCTGCCTAAAACTGCTGCTGAGATGGAATCAATAGAGAAGTTCTTGCAGCTTCAATCCGGTGCCGTG CCTTGTAAGATTCGAGCTAAACGAGGTTTCGCAACTCACCCACGAAGCATTGCTGAGAGGGTGAGAAGGACGAAAATAAGCGAAAGAATGAGAAAACTGC AGGAGCTTTTCCCCAAAACAGACAAGCAAACGAATACATCGGAGATGTTGGATATGGCAGTTGATTACATCAAAGACCTGCAGAAACAAGTCCAGAACTT GAGGGATACAAAAGCCAGATGCACATGTTTGAGGGAACACACAGCATGA
AA sequence Show only first row Show all	>Lus10037484 pacid=23167174 polypeptide=Lus10037484 locus=Lus10037484.g ID=Lus10037484.BGIv1.0 annot-version=v1.0 MSMIYSPNLKYPDGELGIKNGFQLDYHQLPLDLSPNFSNATYNQQLQGNNSGLARLRSAPSSFLADLVNGGSSDSIGFDDFRFFRPPSPDIDAIFGELQG FGEAAVKKEAAADSEIGSYNNLGGDHTTSSCIDTTTFSSVLGPSSSSFAAGSGNGSNLARHNSSPAGFFSSIVVENGFHGVGEANPSTRSNSGSKLRRST QLPKISEIGEETFLSTTSSNSGKRPYSSSVNISWDNASWSTGNKKLKQDRRDDDDLDLFGLDNLQQQNGGSRLSHHLSLPKTAAEMESIEKFLQLQSGAV PCKIRAKRGFATHPRSIAERVRRTKISERMRKLQELFPKTDKQTNTSEMLDMAVDYIKDLQKQVQNLRDTKARCTCLREHTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	0	1
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	2.0	0.9173
					Lus10039759 [exp]	2.0	0.9242
					Lus10018536 [exp]	7.0	0.8546
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	10.7	0.8519
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10003275 [exp]	12.0	0.8931
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	13.0	0.8767
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	13.0	0.8352
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	13.2	0.9041
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	13.6	0.8661
AT5G39590			TLD-domain containing nucleola...		Lus10024317 [exp]	14.2	0.8212

Compare expression of checked genes

Lus10037484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.