Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52120 424 / 3e-145 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015703 [exp] 838 / 0 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269900 [exp] 511 / 2e-179 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.009G064600 [exp] 484 / 1e-168 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0449 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10037485 pacid=23167272 polypeptide=Lus10037485 locus=Lus10037485.g ID=Lus10037485.BGIv1.0 annot-version=v1.0 ATGGACAAGCAAGCACCTTCGAGTCTTTTTGTTAACGATGGTTCATTCATGGAGAGGTTCAGACAACTTCAGCAAGACAATGGGAAGGACCAAGAGAAGG ATAAGGGACCTAGTACAGCAGAAAAGGAGTCCAGACCCAAGCCAATCATTTCGGGATCTGTGACTCCTAAACCTTCTGTTGGTAAGATAAGCATGCAGTT GAAGGGCAGTGATGGACGCAATAGTGTGCAGTCTTCTTCTGGTGGAAAACTTGCTTTCAGTTTGAAACAGAAGTCGAAGATTGTGGCACCTGCAGTCCGG TTGGGTGCAGATGAAGATGACGAAGATGAAGTAGATGCTGGGAATCTATCAAGTGACATACCAGCCAAAAGACAAAAGTTGGGGCGAGTGGATGCCTCTG AACAATCATCTAGACAAGTGGATGTTGGTAATGACTGCTTATACATATGTTATAGTGAGGGTATGAATAGGTGGCCTTTTGGGTTTCTTGGTGCCTTGGA CATCTTGGTAGACAGAAACGCACAGTGCTTAGTTCTTCTAACACCAACTTCCCCAAGTGACCCTACAGTGAAGAAAGTTACAGACAAGTTGGCAAGTTTT GTTGCCAAAAATGGGAGGCAGTTTGAAAGCGTCACTCGCCAGAAGAATCCAGGAGATACCCCATTCAAGTATGTACTAGAATATGAAGTTCATGGAAAAA CTTCGATTTCTAAAGCTTCAGCTGCACTATATGCAGACTTTAAGCTGCACTCCAAAGGGTTAACTTCGCTTTGTGCTCATGCTGTTTACAGGTTTTTGTT TGATAAAGCATCTCCTGACTATAAGTATTATGAATTCCGACTTGCTGAAGAGGAAAAGATTCTTGGTCAGACTAAAGATTCTGTCAAACATGTTGGGGCT ACAAGCACATCGACCTTGAAATTGGTTAATTCCCAAAGATCACATCAGCAGCAACCGAATTATCAAATCCCTGCTTCAGCTTTATATGGAGCGACGGAAG ACTCTAGGATATCTGAACAGACAGGTGAATATAATGCACCGCCAACTGATCCTATAGCAATGATGGAGTTCTACATGAAGAAAGCTGCTCATGAAGAGAA ACGTAAACAACCCAGACAGTCCAAGGATGAAATGCCACCACCAGCTTCCCTTCAAGGCACAGGTCCTCCAAAGAGAGGTCACCATATGGGTGATTACATC CCTCCAGAAGAGCTTGCAAAGTTCATGGCTTCCTGCAATGATGCTTCTGCCCAGAAAGTTTCTCAAGAGGCAGCAGAAAGAGCCCGGATTCAGGCCGACA ATGTCGGGCATAAGCTGTTGTCCAAAATGGGCTGGAGAGAAGGTGAGGGTCTGGGAAGCTCAAGGAGTGGAATCGCTGATCCTATCATGGCTGGAAACAT AAAGAAGGACAATTTGGGTGTTGGAGCTCAGCAGCCCGGCGAAGTGGCGCCCGAGGACGACATCTATGAGCAGTACAAGAAGCGAATGATGCTCGGTTAT CGTCACAGGCCGAATCCCCTGGTATTCGATTCTGTTCTGTTTTGTGTTGAAGTCTGA
AA sequence Show only first row Show all	>Lus10037485 pacid=23167272 polypeptide=Lus10037485 locus=Lus10037485.g ID=Lus10037485.BGIv1.0 annot-version=v1.0 MDKQAPSSLFVNDGSFMERFRQLQQDNGKDQEKDKGPSTAEKESRPKPIISGSVTPKPSVGKISMQLKGSDGRNSVQSSSGGKLAFSLKQKSKIVAPAVR LGADEDDEDEVDAGNLSSDIPAKRQKLGRVDASEQSSRQVDVGNDCLYICYSEGMNRWPFGFLGALDILVDRNAQCLVLLTPTSPSDPTVKKVTDKLASF VAKNGRQFESVTRQKNPGDTPFKYVLEYEVHGKTSISKASAALYADFKLHSKGLTSLCAHAVYRFLFDKASPDYKYYEFRLAEEEKILGQTKDSVKHVGA TSTSTLKLVNSQRSHQQQPNYQIPASALYGATEDSRISEQTGEYNAPPTDPIAMMEFYMKKAAHEEKRKQPRQSKDEMPPPASLQGTGPPKRGHHMGDYI PPEELAKFMASCNDASAQKVSQEAAERARIQADNVGHKLLSKMGWREGEGLGSSRSGIADPIMAGNIKKDNLGVGAQQPGEVAPEDDIYEQYKKRMMLGY RHRPNPLVFDSVLFCVEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	0	1
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	1.0	0.9140
					Lus10042562 [exp]	3.5	0.8960
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	3.7	0.9120
AT1G57540			unknown protein		Lus10024000 [exp]	5.9	0.8397
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	6.7	0.8993
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	7.3	0.8849
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	8.4	0.8890
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	9.2	0.8652
					Lus10030083 [exp]	10.2	0.8500
AT5G06830			unknown protein		Lus10016277 [exp]	11.0	0.8903

Compare expression of checked genes

Lus10037485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.