Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06790 69 / 2e-13 plastid developmental protein DAG, putative (.1.2) AT3G16760 57 / 4e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11430 55 / 7e-09 plastid developmental protein DAG, putative (.1) AT4G20020 55 / 2e-08 unknown protein AT1G32580 49 / 1e-06 plastid developmental protein DAG, putative (.1) AT1G53260 47 / 3e-06 unknown protein AT2G33430 47 / 3e-06 DAL1, DAL differentiation and greening-like 1 (.1) AT2G35240 45 / 3e-05 plastid developmental protein DAG, putative (.1) AT3G15000 44 / 6e-05 cobalt ion binding (.1) AT5G44780 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016825 [exp] 99 / 3e-24 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10034684 [exp] 72 / 3e-15 ND 66 / 9e-13 Lus10003542 [exp] 66 / 7e-14 ND / Lus10007615 [exp] 57 / 2e-09 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 56 / 2e-09 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10021716 [exp] 54 / 4e-09 ND / Lus10037713 [exp] 55 / 3e-08 AT4G20020 261 / 9e-84 unknown protein Lus10035806 [exp] 54 / 7e-08 AT4G20020 278 / 4e-90 unknown protein Lus10036589 [exp] 52 / 2e-07 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007200 [exp] 76 / 7e-16 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.010G007000 [exp] 61 / 2e-10 AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G032900 [exp] 52 / 6e-08 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 45 / 2e-05 AT4G20020 239 / 2e-74 unknown protein Potri.008G169900 [exp] 45 / 2e-05 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 45 / 2e-05 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.001G393400 [exp] 45 / 4e-05 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.011G112200 [exp] 44 / 5e-05 AT3G15000 245 / 2e-77 cobalt ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037488 pacid=23167114 polypeptide=Lus10037488 locus=Lus10037488.g ID=Lus10037488.BGIv1.0 annot-version=v1.0 ATGGGGGTAGGGTTTGTGATAAGGGATGACTCAAGCAACTTCAAGCTGGCGGCGATTCTCAAGCTTGCTGGGATGTGGCTGCGTGTCCATGCGGAAGCAA TGGCCGTTGAATTTGGAATTCAGCTTGCCATTCGTCATGGTTATTTCAAGGTAGAGATGGAGAGTGACTGTACTGTTGTTATTGAAGGCATTCGGCAGAA ATTGCCTGCGGCATGGCAATCGCGAGACATCTTCTCGTTGGCTTCCTCTTCTCCTTCCTCCACTTCATCCCCCTTACTATCTTCTCGTTGGCTTTGCTTC AAAGATGTCCCTGGCGTTCTGTGGGTGCTTCCAGATTCATATCTTGATGTGCCTAACAAAGATTATGGAGGTTATTGCACGAGACACTTGTTCCAACATC GAACCGCTTGCGATCTTTTTGTGGACGGGAAAGTTATCCATAGGCCTCAGTATTGGTACAATGACAGCCAGAACTCTAGGAACTACAGGCCTCGCCCAAA GTATGATCGTCGGAGGAATCAGAACTCGTCTGGTTATTCGTCGTCAACAACGTCCACGGCGCCTGCTTTTCAACCGCGGAAGCCTTCCTGGACTCACCAA CCGGCTGCTCCTAGTCAACCAGCTCGGAGTGGTTTATTAGATGGGCCGAATTCGATGGTTGGAGATATTTTTGGCAAGACGTGGAGCTCTGCTGGTCAAG CAAATAAAAAGGTTCTGGGATTGGGATCGGAATTGCGGAGAAGAATCCGAATTTTTTCTGCGATCTTGTTACCTCTGCTCTGGGGCAGGGAAACAAGGGT TCTGGGACTGCTCCTTTGA
AA sequence Show only first row Show all	>Lus10037488 pacid=23167114 polypeptide=Lus10037488 locus=Lus10037488.g ID=Lus10037488.BGIv1.0 annot-version=v1.0 MGVGFVIRDDSSNFKLAAILKLAGMWLRVHAEAMAVEFGIQLAIRHGYFKVEMESDCTVVIEGIRQKLPAAWQSRDIFSLASSSPSSTSSPLLSSRWLCF KDVPGVLWVLPDSYLDVPNKDYGGYCTRHLFQHRTACDLFVDGKVIHRPQYWYNDSQNSRNYRPRPKYDRRRNQNSSGYSSSTTSTAPAFQPRKPSWTHQ PAAPSQPARSGLLDGPNSMVGDIFGKTWSSAGQANKKVLGLGSELRRRIRIFSAILLPLLWGRETRVLGLLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	1.7	0.8947
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	2.4	0.8681
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	3.9	0.8525
					Lus10010599 [exp]	4.5	0.7490
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	7.5	0.8345
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	7.6	0.7027
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	8.5	0.7904
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	8.7	0.8296
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	11.0	0.7736
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	11.0	0.7682

Compare expression of checked genes

Lus10037488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.