Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27870 474 / 2e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 468 / 2e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 465 / 7e-157 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 419 / 2e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 340 / 2e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 338 / 5e-109 ATPMEPCRA methylesterase PCR A (.1) AT3G60730 332 / 2e-107 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 332 / 2e-106 ATPME2 pectin methylesterase 2 (.1) AT3G43270 330 / 2e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G15980 335 / 3e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020909 [exp] 677 / 0 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 671 / 0 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 620 / 0 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 372 / 4e-122 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 371 / 1e-121 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 357 / 1e-115 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 343 / 6e-111 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 337 / 7e-109 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 337 / 1e-108 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010464 [exp] 500 / 6e-172 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 450 / 2e-152 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 449 / 9e-152 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 387 / 1e-127 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 385 / 2e-127 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 380 / 4e-125 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 374 / 7e-123 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 372 / 3e-122 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 373 / 4e-122 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 362 / 9e-119 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037489 pacid=23167200 polypeptide=Lus10037489 locus=Lus10037489.g ID=Lus10037489.BGIv1.0 annot-version=v1.0 ATGGTTAACGGCGACAACCAAAAGAAGAAGAACATTATCATCGGCGGCGGCATCTTCTCCATCCTCTTGATGGCAATGGTGGCGGCCGTGACGATCGGAG TCCACAAAAACCCTGAGGAGAGCCGCAAGATCATGACAACGGAGCGAGAGGAGTTCCTCGCAGAAAGTAAGACGGTGGTGAAGGAACTTTGCACCCCATC ACTAATCAAGCCAAACTGCGAGCAAGGCCTCGAGAAATCGGCGGAAACCACCACGGACCCTAAGAAGCTCGTCCAGGACGGATTCCAAATGGTGGTTGAT TCGTTGAAAACAGCAATGACCAACTACAACGCCCTGAAGCCTACGGTGGCGAACATCCCTAGGGCGAAGCGCGCCTTCGAGATCTGCGACAATTTCCTCA ATATGGCTATTAAGGACCTGAAGCGATCTCAGCAGGAACTAGAGAACTTCGACCACGCAAATAGGGTATTCCACATCGACAACCTCAAGACGTGGATCGA GGCCACCTTGACCCATCAAGAAGTGTGTTGTGATGGTTTCAAAAATACGACAACAGAGCTAGCTACAAAGGTGAGACAGATAATGAAAGATGCAGGAATC CAAACATGCAACGGACTCGCCACCATCAATGGGCTAGCTATCATATTGGCGAGCAATCCGGGCATATTCAATGCACCTTCTGGTGCCCCGGATGCCCCCA CTGCTGCCCCCTCAGTAGCTCCGACGAGGAGGTTGTTGGGTGGAGGGGACAATAGCGACGACGACTCATCATCGGAGTTTCCCAGCTGGGTGACTCCGAC GAAAAGGAGGTTTCTGCAGGCTACGCCAGCGACTGTTAAGGCGGATATTGTTGTGGCTCAGGATGGAAGCGGGCAGTTTAAGACCGTTGGTGATGCTGTT GCGAGTATTGAACCAGATCATAAGGGCCCTCTTGTTATCCATGTTAAGGCCGGTGTTTACGAAGAACAAGTTCTTATTCCAGAGTGGGCCACTAACCTTA TGATGATCGGAGATGGCCCCACCAAGACTAAGATCACTGCGAAGAAAAACTTCAAAGAAGGAACAGCTACCGTCGACACTGCTACTTTTGCTGTCAATGC ACCAGGGTTCATAGCAAAGGACATGGGGTTCGAGAACGCGGCAGGACCAGAAGGCTTACAAGCTGTAGCCTACCTGTCAATCTCCGACTTCTCCGTCCTA TACAACTGCCAATTCGACGGCTACCAAGACACGGTCTGCACACAATCCTACCGCCAGTTCTTCCGCGACTGCACAATCTCGGGAACCATCGACTTCATCT TCGGAGTAGCTCGAGTCGTTTTCCAAAACTGCACCCTCATCATTCGAAAGCCGCTACTTGGCCAGTCTTGCATCGTGACGGCAGAAGGCCGTCAGGACCC TAACGGGAACTCATCCATCGTCATCCAGAACAGCAAGATCATAGCCGACCCGGCCTACTTAGCGGTGAAGGACACCACCAAGGCACACCTTGGACGGCCG TGGAAGGAATATTCCAGGACCGTTATCATGCACACAGAGATTGACGGAATCATTTCTCCTGAAGGGTGGCTGCCATGGGACGGAGAGTTCGGTCTCAAGA CCCTTTACTATGCCGAATTCGAGAACAAGGGTCCCGGTGCAGCCCTGGCGGGTCGGGTCAAGTGGCCCGGGATTAGGCACATCACTGCCGCGGAAGCCGA AATGTTCACTCCTGCTAAGCTGTACCCGGAAGGCGACAAGTGGATCACCGACACGGCCATTCCGTACACCGCCGGATTGTGA
AA sequence Show only first row Show all	>Lus10037489 pacid=23167200 polypeptide=Lus10037489 locus=Lus10037489.g ID=Lus10037489.BGIv1.0 annot-version=v1.0 MVNGDNQKKKNIIIGGGIFSILLMAMVAAVTIGVHKNPEESRKIMTTEREEFLAESKTVVKELCTPSLIKPNCEQGLEKSAETTTDPKKLVQDGFQMVVD SLKTAMTNYNALKPTVANIPRAKRAFEICDNFLNMAIKDLKRSQQELENFDHANRVFHIDNLKTWIEATLTHQEVCCDGFKNTTTELATKVRQIMKDAGI QTCNGLATINGLAIILASNPGIFNAPSGAPDAPTAAPSVAPTRRLLGGGDNSDDDSSSEFPSWVTPTKRRFLQATPATVKADIVVAQDGSGQFKTVGDAV ASIEPDHKGPLVIHVKAGVYEEQVLIPEWATNLMMIGDGPTKTKITAKKNFKEGTATVDTATFAVNAPGFIAKDMGFENAAGPEGLQAVAYLSISDFSVL YNCQFDGYQDTVCTQSYRQFFRDCTISGTIDFIFGVARVVFQNCTLIIRKPLLGQSCIVTAEGRQDPNGNSSIVIQNSKIIADPAYLAVKDTTKAHLGRP WKEYSRTVIMHTEIDGIISPEGWLPWDGEFGLKTLYYAEFENKGPGAALAGRVKWPGIRHITAAEAEMFTPAKLYPEGDKWITDTAIPYTAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	0	1
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	2.4	0.9814
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	3.5	0.9809
					Lus10032472 [exp]	3.9	0.9772
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	5.3	0.9766
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	5.5	0.9671
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	5.5	0.9631
					Lus10018443 [exp]	6.5	0.9343
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	7.7	0.9324
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	7.9	0.9604
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	8.9	0.9513

Compare expression of checked genes

Lus10037489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.