Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16720 166 / 7e-48 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G15975 117 / 2e-30 RING/U-box superfamily protein (.1) AT4G15940 111 / 3e-28 Fumarylacetoacetate (FAA) hydrolase family (.1) AT3G16700 104 / 3e-26 Fumarylacetoacetate (FAA) hydrolase family (.1), Fumarylacetoacetate (FAA) hydrolase family (.2) AT2G47560 99 / 2e-23 RING/U-box superfamily protein (.1) AT3G62690 97 / 1e-22 ATL5 AtL5 (.1) AT1G72200 98 / 4e-22 RING/U-box superfamily protein (.1) AT1G72310 96 / 8e-22 ATL3 RING/U-box superfamily protein (.1) AT1G53820 94 / 3e-21 RING/U-box superfamily protein (.1) AT2G42350 91 / 6e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006493 [exp] 431 / 3e-151 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10006496 [exp] 141 / 3e-39 AT4G15940 362 / 1e-128 Fumarylacetoacetate (FAA) hydrolase family (.1) Lus10023617 [exp] 96 / 2e-21 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10031515 [exp] 95 / 2e-21 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 94 / 5e-21 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10002194 [exp] 92 / 7e-21 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10034953 [exp] 94 / 8e-21 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10004460 [exp] 94 / 1e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10012975 [exp] 93 / 3e-20 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219200 [exp] 214 / 2e-66 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.010G010500 [exp] 202 / 6e-62 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.010G011000 [exp] 123 / 4e-32 AT4G15940 369 / 1e-130 Fumarylacetoacetate (FAA) hydrolase family (.1) Potri.009G073900 [exp] 105 / 7e-26 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.019G091400 [exp] 103 / 6e-25 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 101 / 4e-24 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 100 / 4e-24 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.001G162000 [exp] 97 / 2e-22 AT1G53820 149 / 2e-43 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 96 / 2e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 93 / 2e-21 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0377 [flax] [poplar] FAH PF01557 [flax] [poplar] FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037490 pacid=23167128 polypeptide=Lus10037490 locus=Lus10037490.g ID=Lus10037490.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGCTTTGGGGCTCCAGAGGCTACTGCAAGTAGGTACGAAGATCGTTGGCGTAGGCCGTAACTACGCAGCTCATGCTAAAGAACTCGGCA ACGCCGTCCCCGATGAGCCGGTGCTGTTCCTGAAGCCTACTTCGTCCTACTTGAATGCACGATCGAGATTCCACATCCTCTGGAGTCGCTGCATCACGAG GTGGAGCTCGCCGTCGTTATTAGCCAGAGAGCTCGCCATGGATTATGTCGGAGGCTACGCTCTTGCGTTGGATATGACTGCAAGAGAAATCCAAGCTTCT GCTAAGCAAATCAAAGTTCCTTCCAACACAAACACCACTCACTCAACCATCCACCACCATCAAGATTCAAGCCAACTGGATTCCTACCACCAAAACCACT TCCTTATGGATTCCGACCCCAAGGAATCGAATCCTACCCCGTCCTTTGCCGACCGGAGCTACGCTCTCAGCGGGAGGATCATGCTCAGCGCAATCGTCGT CCTCTTCTTCGTCGTTGTCGTCATGATCTGCCTCCACCTCTACGCCCGCTGGTACCTCCTCCGCGCTCGCCGTCGCCAGATGCGCCGCCGCAGCCGCCGC TCCGCCAACCTCGTCTTGTATTTAGATCCGGATACAGCTAACCCTACGACCGCCGCCGCCTCCTCTCGCGGATTGGACGCCTCTGTGTTGAAATCACTCC CTCTGTTTGTCTACTCTTCCGATTCACAATTCGAATCGATGGAGTGCGCTGTTTGTTTGTCCGAATTCGAGGACAAGGAGAAAGGGCGGACTCTGCCGCA CTGTAAGCATAGCTTTCACACCGAGTGTATTGACATGTGGTTCCATTCTCATTCCACCTGTCCGCTCTGCCGCTCGCCGGTTGAGCCGGTGGCTGTTAGT TCGGATGTGGAGGTGGTTACTCCGTCAGATCTGTGCAATTCGTGTGCGGACCACGTCGGTCCTTCCACGTCAGCAGAGTCTCGGGAAATGAGGAAGCCCG TGCGGGATCTGGATGTGAGAATTGACGTGCCGAGAAGGACCGGGAATTTCGGGGACGCGTCGTCGTCGTCTGTCGAGTCGCCGGCGAGTCAGGGGTTCAG GTCGCCGATGAGCCGGATGCTGTCGTTTACGAGGATTCTGAGCAGGGACTGGAGAGGGAATAATCCGTCCCCTCGGTCTCCGATCCCGACGAGCTGCGGC GGTACTTCGGCGGCGAGTGAGGATGGTGGGATAGTAGACTTGGAGCGAGGTAAGGAGGAGGTGGAGACTCGGCCGAGTACGGGAAACGAGTTAGCGAGTT AG
AA sequence Show only first row Show all	>Lus10037490 pacid=23167128 polypeptide=Lus10037490 locus=Lus10037490.g ID=Lus10037490.BGIv1.0 annot-version=v1.0 MATAALGLQRLLQVGTKIVGVGRNYAAHAKELGNAVPDEPVLFLKPTSSYLNARSRFHILWSRCITRWSSPSLLARELAMDYVGGYALALDMTAREIQAS AKQIKVPSNTNTTHSTIHHHQDSSQLDSYHQNHFLMDSDPKESNPTPSFADRSYALSGRIMLSAIVVLFFVVVVMICLHLYARWYLLRARRRQMRRRSRR SANLVLYLDPDTANPTTAAASSRGLDASVLKSLPLFVYSSDSQFESMECAVCLSEFEDKEKGRTLPHCKHSFHTECIDMWFHSHSTCPLCRSPVEPVAVS SDVEVVTPSDLCNSCADHVGPSTSAESREMRKPVRDLDVRIDVPRRTGNFGDASSSSVESPASQGFRSPMSRMLSFTRILSRDWRGNNPSPRSPIPTSCG GTSAASEDGGIVDLERGKEEVETRPSTGNELAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	0	1
AT4G32020			unknown protein		Lus10001936 [exp]	1.4	0.9289
AT1G75860			unknown protein		Lus10033130 [exp]	2.8	0.9165
AT1G76070			unknown protein		Lus10021840 [exp]	2.8	0.9017
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	4.2	0.9148
AT4G32030			unknown protein		Lus10001935 [exp]	5.9	0.8985
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	6.0	0.8983
AT5G54165			unknown protein		Lus10023231 [exp]	8.4	0.8977
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	8.8	0.8709
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	10.2	0.8574
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	10.6	0.8895

Compare expression of checked genes

Lus10037490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.