Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39730 214 / 1e-71 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT2G22170 212 / 2e-70 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 139 / 1e-42 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006497 [exp] 314 / 1e-110 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10009020 [exp] 176 / 3e-56 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076900 [exp] 219 / 2e-73 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091000 [exp] 213 / 3e-71 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G077000 [exp] 213 / 5e-71 AT4G39730 218 / 3e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 208 / 4e-69 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.003G107100 [exp] 173 / 3e-55 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10037491 pacid=23167017 polypeptide=Lus10037491 locus=Lus10037491.g ID=Lus10037491.BGIv1.0 annot-version=v1.0 ATGGCCTCTCGTCTTTTCCTTCTCTCCGCTCTACTCCTCCTCGCTATCTCCGCCGTCCCTTCTTCCGCGGATGATGACGAATGCGTTTTCACACTGTTCG TGAGGACCGGATCCATCTTCAAAGGAGGAACGGACTCCTTGATCGGTGCCAGGTTGTTCGACGAGAATGGCTACTACGTCGAGATCAAAGATCTGGTTGC TTGGGGAGGACTGATGGAAGAGGGCCACAACTACTTTGAGAGGAGCAATCTGGACATCTTCAGCGGCAGGGCGCCTTGCCTGACCTCCCCGTTCTGCGCC TTGAACTTGACCTCTGATGGATCAGGGGCCCACCACGGCTGGTACTGCAACTACGTGGAGGCTACCTCCACCGGCGTCCACAGCTCCTGCTCCCAGCAGC TATTTACCGTCGAGCAGTGGCTCGCTACAGATACCTCGCCCTACGAGCTTTCAGCGATCCGTAATTCATGTCCATACGATTTGGTTACCAAGGAGACTCG TCCGGTGACAGCCGCCGGCCGCAAGTCAGTGGCCTCCTCCTCCTCCTCCTCCTCCTTGATAAGAGAGGTTGTAGCTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10037491 pacid=23167017 polypeptide=Lus10037491 locus=Lus10037491.g ID=Lus10037491.BGIv1.0 annot-version=v1.0 MASRLFLLSALLLLAISAVPSSADDDECVFTLFVRTGSIFKGGTDSLIGARLFDENGYYVEIKDLVAWGGLMEEGHNYFERSNLDIFSGRAPCLTSPFCA LNLTSDGSGAHHGWYCNYVEATSTGVHSSCSQQLFTVEQWLATDTSPYELSAIRNSCPYDLVTKETRPVTAAGRKSVASSSSSSSLIREVVAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	0	1
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	2.8	0.8234
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	3.0	0.7844
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	3.2	0.8212
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10018052 [exp]	6.6	0.8358
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	7.3	0.8459
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	7.7	0.8111
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	12.4	0.7393
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	13.2	0.7165
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	13.4	0.7541
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	16.2	0.8326

Compare expression of checked genes

Lus10037491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.