Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06850 566 / 0 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT1G54220 142 / 2e-36 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 141 / 3e-36 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 134 / 2e-33 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G34430 105 / 4e-24 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G25860 102 / 5e-23 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT5G55070 96 / 4e-21 Dihydrolipoamide succinyltransferase (.1) AT4G26910 93 / 2e-20 Dihydrolipoamide succinyltransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006498 [exp] 938 / 0 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10006877 [exp] 152 / 2e-40 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 141 / 7e-36 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 141 / 8e-36 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 137 / 2e-34 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10032632 [exp] 107 / 1e-24 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043116 [exp] 102 / 4e-23 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043117 [exp] 102 / 5e-23 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10041467 [exp] 92 / 1e-19 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011300 [exp] 640 / 0 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 583 / 0 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.001G198000 [exp] 139 / 2e-35 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 135 / 4e-34 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 134 / 1e-33 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.013G114300 [exp] 116 / 9e-28 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 106 / 1e-24 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 106 / 1e-24 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.014G154700 [exp] 106 / 2e-24 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.010G126600 [exp] 106 / 2e-24 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0105 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10037492 pacid=23167315 polypeptide=Lus10037492 locus=Lus10037492.g ID=Lus10037492.BGIv1.0 annot-version=v1.0 ATGATTCCGATCAGGATATTGAACCGGAGACGAGCTTGGTCCGCCGCCGGCTCCCGATTCCTGAGCGGTTACGCTCCTCATACTCCTCTTCCTTATCCAC CGCCGACCGCCGTCATAGCTGGACACCACGAGCTTCCGTTCCTCTCTCTATTGTCTCAACTCGCTCGCTCAAGCCACACGGAAGCTTCGCTCGGATTCCC CCGCGACGGCTTCATTTCTATCCGACGGCGTTGCTTTTCCGGTAATGCGGTGGCTGATCTTCCTGAGGAAGGGATAGTTGATGTCCCATTGGCGCAGACC GGCGAAGGTATTGCTGAATGCGAATTGCTTCAGTGGTTTGTTAAAGAGGGGGATGAAGTTGATGAGTTCCAGCCACTGTGTGAAGTCCAGAGTGACAAGG CTACCATTGAGATCACTAGCCGTTATAAAGGAAGAGTGTCTCAGATGCTCTATGTTCCTGGGGACATCGTCAAGGTTGGGGAAACTCTTGTGAAGATGCT TGTTGAGGATTCGCAGGTTCCCGTACAGTCAACTGGGTCTCAGGTGAATGAGAATCTACACAGTGAGACATTTAGTTCTGATTTGAACAAAAGTAAATCT GGTGGAATCTTGTGCACACCGGCAGTGCGGCACATTGCTAAACAGTATGGCATCAGTCTACATGATATCCAAGGATCTGGGAAAGCTGGGAGGGTGCTAA AAGAAGATATTCTTAAATATGCTGTTCAGAAAGGAATCATTGAGTCTTCTGGCATTCATTTGGGTGATGAGCTTCAGGAAGGAGAAGCACACGACAATCC TGGATCAGCTGAAATTTCGGACCACCCGAATGATAAGAAGGTTACCCTAAGGGGATTCCAGAGGGCAATGGTGAAGACAATGACCATGGCTGCCAAAGTT CCGCATTTTTATTACGTGGAGGAGATCGTTTGTGATGCATTAGTGGAACTCAAGGCCTCGTTCCAAAAGAATACAATTGATCCAGCCATTAAGCATACAT TTCTTCCATTATTGATCAAGTCTCTCTCATCAACCCTCAGCCAATACCCTTTGGTGAATAGTTGTTTCAACGAGCATGCAATGGAGGTCATACTAAAAGG CTCCCACAATATTGGAATTGCCATGGCTACTCCGTCTGGTCTAGTGGTACCGAACATAAAGAATGTTCAGTCTCTTTCAATCCTGGAGATAACAAAGGAA CTCTCGCGCTTGCAACAGTTGGCAGTAGCTAACAAACTTAGCCCCGAGGATATAACTGGTGGGACGGTGACTTTAAGTAACATCGGTGCAATTGGCGGGA AGTTCGGCTCTCCCCTCCTCAATCTGCCTGAAGTCGCCATCATTGCCATGGGCCGAATCCAGAAAGTCCCCCATTTCGACAAAAATGGGAATGTCTATCC TGCATCAATCATGACTGTAAATATAGGAGCAGATCACAGAGTTCTGGATGGGGCTACAGTCGCAAGATTCTGCACTGAGTGGAAACAGCTGATTGAAAAA CCTGAACTGTTCATGCTGCAACTCAGATGA
AA sequence Show only first row Show all	>Lus10037492 pacid=23167315 polypeptide=Lus10037492 locus=Lus10037492.g ID=Lus10037492.BGIv1.0 annot-version=v1.0 MIPIRILNRRRAWSAAGSRFLSGYAPHTPLPYPPPTAVIAGHHELPFLSLLSQLARSSHTEASLGFPRDGFISIRRRCFSGNAVADLPEEGIVDVPLAQT GEGIAECELLQWFVKEGDEVDEFQPLCEVQSDKATIEITSRYKGRVSQMLYVPGDIVKVGETLVKMLVEDSQVPVQSTGSQVNENLHSETFSSDLNKSKS GGILCTPAVRHIAKQYGISLHDIQGSGKAGRVLKEDILKYAVQKGIIESSGIHLGDELQEGEAHDNPGSAEISDHPNDKKVTLRGFQRAMVKTMTMAAKV PHFYYVEEIVCDALVELKASFQKNTIDPAIKHTFLPLLIKSLSSTLSQYPLVNSCFNEHAMEVILKGSHNIGIAMATPSGLVVPNIKNVQSLSILEITKE LSRLQQLAVANKLSPEDITGGTVTLSNIGAIGGKFGSPLLNLPEVAIIAMGRIQKVPHFDKNGNVYPASIMTVNIGADHRVLDGATVARFCTEWKQLIEK PELFMLQLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	1.4	0.9673
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	2.4	0.9630
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	2.8	0.9669
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	3.0	0.9662
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10020566 [exp]	3.3	0.9474
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	3.7	0.9596
AT1G27290			unknown protein		Lus10003121 [exp]	4.0	0.9564
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	4.5	0.9659
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	4.5	0.9489
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	4.6	0.9393

Compare expression of checked genes

Lus10037492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.