Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49120 75 / 2e-17 Protein of unknown function (DUF581) (.1) AT1G78020 61 / 4e-12 Protein of unknown function (DUF581) (.1) AT4G39795 59 / 7e-12 Protein of unknown function (DUF581) (.1) AT1G22160 58 / 4e-11 Protein of unknown function (DUF581) (.1) AT4G17670 52 / 7e-09 Protein of unknown function (DUF581) (.1) AT3G22550 53 / 8e-09 Protein of unknown function (DUF581) (.1) AT5G65040 51 / 9e-09 Protein of unknown function (DUF581) (.1) AT5G20700 52 / 1e-08 Protein of unknown function (DUF581) (.1) AT2G44670 50 / 1e-08 Protein of unknown function (DUF581) (.1) AT5G47060 51 / 3e-08 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006499 [exp] 151 / 1e-47 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 59 / 2e-11 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 59 / 2e-11 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 52 / 1e-08 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 52 / 3e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 49 / 3e-08 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 50 / 8e-08 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10022073 [exp] 49 / 1e-07 AT3G63210 59 / 5e-11 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 49 / 2e-07 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011700 [exp] 81 / 4e-20 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 77 / 2e-18 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 67 / 2e-14 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 66 / 3e-14 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G078600 [exp] 61 / 6e-12 AT1G78020 106 / 3e-29 Protein of unknown function (DUF581) (.1) Potri.007G089200 [exp] 56 / 2e-10 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1) Potri.018G146800 [exp] 54 / 3e-09 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 54 / 4e-09 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 54 / 4e-09 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 54 / 5e-09 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10037493 pacid=23167173 polypeptide=Lus10037493 locus=Lus10037493.g ID=Lus10037493.BGIv1.0 annot-version=v1.0 ATGGTGGGATTGAGCATCGTTTTGGATCACCACCACCGCAAAACCACCACTCAAGTCTTCAACAAATCATCCTTGATCGCCGCCGACCGGAACAAGCTTC ATCATTTGATGCTCTCTTCTTCTCATCCTCCTTCTCCCTCGTCCGGATTTCTGGAGCTCTGTTTTTTCTGCGCCGGGAGACTTCTCCCTGGCATGGACAT CTACATGTACAAGGGAGACAGAGCATTTTGTAGCGTGGAGTGCCGGGACAAGCATATGAACATGGACGAAGAGCAGGAGACCGCCTTGACGACGACGAAG AAGAAGAAGACGAAGAAGAAGCATCAGTACTGTGCGTTTTCGGCTTCTACCATAACGGCTGCTGCGGCGGCGGTGGGAGGTGTTGGTGTTGGCGGTGGCT CTTCCTCTTCTCCGGTGGCCGATAGCGGGAGTCACCGGAAGAGCGGGAGAGGCGGCGGTTTTGTTTACTAG
AA sequence Show only first row Show all	>Lus10037493 pacid=23167173 polypeptide=Lus10037493 locus=Lus10037493.g ID=Lus10037493.BGIv1.0 annot-version=v1.0 MVGLSIVLDHHHRKTTTQVFNKSSLIAADRNKLHHLMLSSSHPPSPSSGFLELCFFCAGRLLPGMDIYMYKGDRAFCSVECRDKHMNMDEEQETALTTTK KKKTKKKHQYCAFSASTITAAAAAVGGVGVGGGSSSSPVADSGSHRKSGRGGGFVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49120			Protein of unknown function (D...		Lus10037493 [exp]	0	1
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	1.4	0.8744
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	3.2	0.8548
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	19.1	0.7835
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	21.5	0.7810
AT4G19950			unknown protein		Lus10018322 [exp]	21.8	0.8131
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	25.7	0.8474
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	26.4	0.8136
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	28.5	0.7592
AT3G51010			unknown protein		Lus10042347 [exp]	32.6	0.8369
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	33.3	0.8384

Compare expression of checked genes

Lus10037493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.