Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06860 1163 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 816 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G15290 127 / 2e-32 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT4G16210 82 / 5e-17 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT4G16800 77 / 3e-15 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 75 / 6e-15 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 50 / 2e-06 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G31810 42 / 0.001 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043224 [exp] 809 / 0 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011102 [exp] 792 / 0 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10006502 [exp] 756 / 0 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 681 / 0 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10020828 [exp] 136 / 2e-35 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 129 / 3e-33 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10016920 [exp] 80 / 2e-16 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10010994 [exp] 80 / 9e-16 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10011336 [exp] 76 / 1e-14 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011900 [exp] 1280 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 1233 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 852 / 0 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.001G398600 [exp] 127 / 3e-32 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.008G104500 [exp] 81 / 1e-16 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.010G146400 [exp] 80 / 3e-16 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 77 / 4e-15 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.003G080800 [exp] 71 / 2e-13 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 69 / 2e-12 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G329900 [exp] 44 / 0.0003 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10037495 pacid=23167279 polypeptide=Lus10037495 locus=Lus10037495.g ID=Lus10037495.BGIv1.0 annot-version=v1.0 ATGGCGAAAGGAGCGACGACGATTGAGGTTGGAGCTGACGGAGTTGCTATCATAACCATCATCAATCCTCCCGTGAATTCCCTCTCCTTTGATGTGTTGT ACAGCTTGAAAGAAAGTTATGATCAGGCACTACGAAGAGATGATGTGAAGGCAATAGTTGTTACCGGTGCAAATGGAAAATTCTCGGGTGGATTTGATAT CAGTGCTTTTGGTGGAGTTCAAACTGGAAAGGTGGACCAACCAAAGCCTGGTTACATATCAGTGGAGGTACTGACTGATACTGTTGAAGCTGCAAGAAAG CCTTCTGTTGCTGCAATTGATGGCCTTGCCTTGGGTGGAGGATTGGAGGTGGCAATGGCTTGCCATGCTCGAATCTCAACCCCCACAGCACAATTGGGCT TGCCTGAACTTCAACTAGGAATAATCCCTGGATTTGGAGGTACACAGAGACTTCCACGTCTTGTAGGGATCTCAAAGGCTCTTGAAATGATGCTGACATC TAAACCGGTCAAAGGAACTGAAGCTCATGGTTTAGGCCTTGTGGATAGTCTAGTTTCTCCTAATGAGTTGGTCACCGTTGCTCGCCGCTGGGCTTTAGAC ATGTTGGAGGGCAAGAAACCATGGGTTCCTAGCCTTTACAAGACAGATAAGTTAGATCCGCTGGGAGAGGCAAGGGAGATATTCAAATTTGTAAGAGCAC AAGTCCGAAGACAAGCTCCCAACCTTACACATCCTTTAGTTTGCATTGATGTTGTCGAAGAAGGCATAGTTTCTGGTGGAAGGGCTGGATTGTGGAAGGA GTTTGAATCTTTCCAAGAACTTGTGCGTGCTGACACCTGCAAGAGCCTGGTCCATATCTTCTTTGCCCAGCGTGGAACAACTAAGGTTCCTGGAGTCACA GACCTGGGACTAAGGCCGAGACGAGTGAATAAGGTTGCTGTACTTGGTGGAGGGCTGATGGGATCCGGAATAGCCACTGCATTAGTCCTGAGTGGTTATC CTGTTATCTTGAAAGAAATAAATGAGAAGTTCTTGCAAGCTGGGATCGATAGAGTAAAAGCCAATTTGCAGAGCCGAGTCAAGAAAGGAAAAATGGCCCA GGAAAAGTTTGAGAAAACCCTGTCTCTTCTCAAGGGTGCTCTTAACTACGATAGCTTTAGGGATGTGGACATGGTCATAGAGGCTGTCATCGAAAATGTC TCCTTGAAGCAACAAATCTTTGCGGACCTCGAGAAGTACTGCCCACCCCATTGCATACTTTCGAGCAACACTTCCACAATCGATTTGAACTTGGTGGGAA GTAAGACAAAGTCTCATGATAGGATTATTGGAGCCCATTTCTTTAGTCCGGCTCATATCATGCCACTCCTGGAAATTGTTCGCACCAATAAGACTTCTCC CCAGGTAATTGTTGATCTCCTAGAGGTCGGGAAAAAGATAAGGAAGACCCCAGTTGTGGTTGGGAACTGTACTGGGTTTGCAGTCAACAGGATGTTCTTC CCTTACACACAAGCTGCTCTTTTGCTTGTGGAGCACGGGACAGATCTTTATCTCATTGATAAAGCTATCACAAAATTTGGAATGCCAATGGGCCCATTCC GGTTGGTTGATTTGGTGGGTTTTGGTGTCGGAGTTGCAACTGCCATGCAGTTTATTGAAAATTTCCCAGAGCGGACCTATAAGTCTATGCTTATCCCTAT AATGCAAGAGGATAAGAGAGCAGGTGAAACTACTCGCAAAGGGTTCTATCTCTATGATGATAAGCGTAAAGCACGTCCAGATCCTGAAATAAAGAAATAC ATTGAGAAGTCGAGAAGCATCTCTGGAGTCTCAATTGACCCAAAGATGGCCAAATTATCGGAGAAGGACATCGTCGAAATGATATTCTTCCCAGTGGTTA ATGAGGCCTGCAGAGTTTTTGCTGAAGGCATCGCAGTCAAAGCTGCGGATCTCGACATTTCATCTGTTATGGGAATGGGTTTCCCTCCTTACAGGGGTGG GATCATGTTCTGGGCGGATTCGCTAGGATCCAAGTACATAAACTCAAGATTGGAGGAGTGGTCCAAGACATTCGGGGACTTCTTCAAACCATGTGCTTTC TTGGCTGAAAGAGCTGCTAAGGATGCTCCTCTGAGTGCTCCGGTGGAGCAAGCCAAGTCTCGGTTGTAG
AA sequence Show only first row Show all	>Lus10037495 pacid=23167279 polypeptide=Lus10037495 locus=Lus10037495.g ID=Lus10037495.BGIv1.0 annot-version=v1.0 MAKGATTIEVGADGVAIITIINPPVNSLSFDVLYSLKESYDQALRRDDVKAIVVTGANGKFSGGFDISAFGGVQTGKVDQPKPGYISVEVLTDTVEAARK PSVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGISKALEMMLTSKPVKGTEAHGLGLVDSLVSPNELVTVARRWALD MLEGKKPWVPSLYKTDKLDPLGEAREIFKFVRAQVRRQAPNLTHPLVCIDVVEEGIVSGGRAGLWKEFESFQELVRADTCKSLVHIFFAQRGTTKVPGVT DLGLRPRRVNKVAVLGGGLMGSGIATALVLSGYPVILKEINEKFLQAGIDRVKANLQSRVKKGKMAQEKFEKTLSLLKGALNYDSFRDVDMVIEAVIENV SLKQQIFADLEKYCPPHCILSSNTSTIDLNLVGSKTKSHDRIIGAHFFSPAHIMPLLEIVRTNKTSPQVIVDLLEVGKKIRKTPVVVGNCTGFAVNRMFF PYTQAALLLVEHGTDLYLIDKAITKFGMPMGPFRLVDLVGFGVGVATAMQFIENFPERTYKSMLIPIMQEDKRAGETTRKGFYLYDDKRKARPDPEIKKY IEKSRSISGVSIDPKMAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDISSVMGMGFPPYRGGIMFWADSLGSKYINSRLEEWSKTFGDFFKPCAF LAERAAKDAPLSAPVEQAKSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	0	1
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	4.6	0.7792
AT5G20610			unknown protein		Lus10021568 [exp]	5.2	0.7424
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	6.5	0.7470
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	7.7	0.7493
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	8.9	0.7240
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	10.2	0.7467
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	12.2	0.7766
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	16.5	0.7444
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	18.0	0.7352
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	18.7	0.7550

Compare expression of checked genes

Lus10037495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.