Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49100 111 / 8e-27 unknown protein AT3G06868 100 / 4e-23 unknown protein AT3G06870 67 / 1e-12 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006504 [exp] 501 / 2e-176 AT5G49100 221 / 5e-68 unknown protein Lus10024784 [exp] 99 / 2e-22 AT3G06868 190 / 1e-56 unknown protein Lus10001474 [exp] 91 / 7e-20 AT3G06868 194 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012000 [exp] 237 / 8e-74 AT5G49100 140 / 1e-37 unknown protein Potri.008G220700 [exp] 227 / 4e-70 AT3G06868 155 / 1e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037496 pacid=23167159 polypeptide=Lus10037496 locus=Lus10037496.g ID=Lus10037496.BGIv1.0 annot-version=v1.0 ATGGCCGGAGAAGCGCCGCCGAAGGGCGCTGGCGACGACGACATGGGAGACGGAATGCAATGCAGCAACCATCCTTACACTAGCAACCCCGGTGGGATCT GCGCCTTCTGCCTCCAGGAAAAGCTCGGCAAGCTCGTTTCCTCTTCCTCCTCATCCTCCTTCCCTCTCTCTGCTCCTTCCTCCTCCTCTTCCCCGCCTTC CTTCAGATCTGACCACCTCCGACTCAACAACTCCAACGCAGCTTCCGCTGCCGCCACTTCTCTCTCGCTCTCCGTCCGTCCCTGCACGCAAGGTGTTCGA CGTAACGACCAAACGAATACTGGGAGTAATAACAGTACTAATAACAGTACCGTCCAGTATAATGAGCAGCACCACATCAAGGCGAAGATCCCGTTCCTCC TGGCGAGGAGGAAGAAGAAGATAATGGCCGCTTCCTCGTCGTCGACTTCTTCGTCGGAGAATCGCGACGTAGTCTTTAAGCGGAGTAAGTCGACAGCTGC TCCAGGGAGGAGGTCGTCTGGCCATTTCTTCAACGACGACGCCGATGATTTCAGCCCCAGGAAGCGCCGCGGTGGATTCTGGTCGTTTCTCTACCACTCT GCTTCTTCCAATTCCAAATCCAATAACAACAGCGGTAACAGAATCGATCATCACAAGGTCTCATCGCATCCAGCAACAGCTTCTTCTTTGTCCAGCTCTC CTTCCGCTGCCAACAACGCTATGAAGAAGGAAAGGTGTTTAGGAGGATCAAACCTCTCAAGGAGAACAGAAATGGTGGCTGTGGAAGAAGAAATAGAGGA TCAGGAAGAAGAAGACAGTCCAAATGCCGATTCTGTCACCAACTCTGCCGGTTCATCATTCGAGAGGAAAGTTTCGAGATCCAGATCCGTGGGATGCGGG AGCAGGAGCTTTTCAGGGGATTTGTTCGAGAAGTTATCAACTGGATTTGACGATTGTGCGCTGAGGAGAGTGGAGTCACAGAGGGAAGGAGGCAAGCACA GAGTTTCATCAGGGATGAAAGATCGGGTCAAGTGTGGTGGAATCTTTGGTGGATTCATCATAACGTCATCGTCTTCATCATCTTCTTCAGCATATTTTAT TTCCGAAGACACGAGTGGGAAATCAGGAGCAGCAGCTGGTGCCACCGGCAGTGGAAATCTTGCCGCTGCACATGGAAGGACAAGGAGCTGGACATGGGCA TTTGCTAGCCCCATGAGAGCTTTCAACAGCAAGCCGGCTTCGACTGCAGGTAAAGATGGGAAGAGGGAGAGTAGTGGGAATAATAAGAAGTCTGTTCCAA ATTTGGCTGCCATTCCTTCGTTGCTAACCGTGAACAGCTAG
AA sequence Show only first row Show all	>Lus10037496 pacid=23167159 polypeptide=Lus10037496 locus=Lus10037496.g ID=Lus10037496.BGIv1.0 annot-version=v1.0 MAGEAPPKGAGDDDMGDGMQCSNHPYTSNPGGICAFCLQEKLGKLVSSSSSSSFPLSAPSSSSSPPSFRSDHLRLNNSNAASAAATSLSLSVRPCTQGVR RNDQTNTGSNNSTNNSTVQYNEQHHIKAKIPFLLARRKKKIMAASSSSTSSSENRDVVFKRSKSTAAPGRRSSGHFFNDDADDFSPRKRRGGFWSFLYHS ASSNSKSNNNSGNRIDHHKVSSHPATASSLSSSPSAANNAMKKERCLGGSNLSRRTEMVAVEEEIEDQEEEDSPNADSVTNSAGSSFERKVSRSRSVGCG SRSFSGDLFEKLSTGFDDCALRRVESQREGGKHRVSSGMKDRVKCGGIFGGFIITSSSSSSSSAYFISEDTSGKSGAAAGATGSGNLAAAHGRTRSWTWA FASPMRAFNSKPASTAGKDGKRESSGNNKKSVPNLAAIPSLLTVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49100			unknown protein		Lus10037496 [exp]	0	1
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	4.0	0.9128
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	5.5	0.9070
AT5G40580		PBB2	20S proteasome beta subunit PB...		Lus10014581 [exp]	9.2	0.8810
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	9.8	0.8956
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	13.4	0.8708
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	13.7	0.8933
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	14.1	0.9006
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	15.1	0.8857
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	16.6	0.9128
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	19.2	0.9004

Compare expression of checked genes

Lus10037496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.