Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62830 525 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 514 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 488 / 3e-172 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 387 / 9e-134 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 386 / 1e-133 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 385 / 7e-133 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G27860 81 / 2e-16 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT2G45310 79 / 6e-16 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT1G08200 79 / 7e-16 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT5G28840 77 / 3e-15 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006510 [exp] 675 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10030368 [exp] 530 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 521 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10015038 [exp] 498 / 4e-176 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 494 / 2e-174 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 471 / 1e-165 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10005450 [exp] 392 / 6e-136 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10040847 [exp] 391 / 2e-135 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 391 / 2e-135 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 524 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 524 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 489 / 1e-172 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 473 / 3e-166 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 397 / 2e-137 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 394 / 2e-136 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 390 / 9e-135 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.001G320000 [exp] 85 / 9e-18 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.005G053000 [exp] 84 / 2e-17 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.017G059100 [exp] 82 / 7e-17 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10037499 pacid=23167263 polypeptide=Lus10037499 locus=Lus10037499.g ID=Lus10037499.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTGAAACCGCCACTCACCGCCGTCCTCCCTCGGCCACCTTCCGGTACTTGCTCCGCGAGCAGAGGCTGGCATGTTTCCTCTCCGGATTCA CACTCGCCGCTCTCTTCTTCCACACATTCCCCATCCCCACGACGACGACGGCGACACCATCTGAAGAAACAACAACCGGATTCTCCGACGGGGCTGTACC CGACCCGATGAGTGAGGCGGTCTTGGCGACCCGGAGGGTGCTGATCGAGTCGTCGGTGGGAGGGAAAGTGCCGCAAGGGTTGAAGAGGAAAGGGAGTCGG ATACTGGTGACCGGCGGGGCCGGTTTCGTCGGGAGCCATCTGGTGGACCGGCTGATTGGGAGAGGCGACAGCGTCATAGTGATCGACAATTTCTTCACGG GCAGGAAAGAGAATCTGATGCACCATTTCGGTAACCACAAGTTTGAGCTCATCCGGCACGACGTCGTGGAGCCGATTCTTCTGGAGGTTGATCAGATCTA TCATTTGGCTTGCCCTGCTTCCCCTGTTCATTACAAGTTCAATCCAACCAACGTGGCCGGAACGTTGAACATGCTCGGCCTGGCGAAGAGAGTCGGGGCG AGGCTCTTGCTAACCAGCACCAGCGAGGTCTACGGCGATCCATTGCAACACCCTCAGTCCGAGACTTACTGGGGGAATGTCAATCCAATTGGAGTGAGGA GCTGCTACGATGAAGGAAAGAGGACTGCAGAGACGCTAGCCATGGACTATCACAGAGGCGCCGGGATCGAGGTGAGGATAGCTCGGATCTTCAACACCTA CGGCCCGCGGGTCGGTCCCGACGGCGGCCCCGCGGATGTGCATCGACGACGGCCGTGTGGTGAGCAACTTCGTAGCGCAGGCGCTGAGGAAGGAGCCGAT GACGGTGTGGAGGGACTTGTACGGTTGATGGAGGGCGAGCACATTGGTCCGTTCAATCTCGGCAACCCTGGGGAGTTCACCATGCTTCAGCTAGCCGAGG TGGTCCAAGAGACGATTGATCCAAAGGCGAGAATAGAGTTCAGGCCCAACACGGAGGACGATCCACACAAGAGGAAGCCGGACATAACGAGGGCGAAAGA ATTGCTTGGTTGGGAGCCGACGGTATCGCTGAGGAAGGGACTTCCGATGATGGTTACCGATTTCCGACAACGCATCTTCGGCGAACAGAAGGCTTTCTCC GCTTGA
AA sequence Show only first row Show all	>Lus10037499 pacid=23167263 polypeptide=Lus10037499 locus=Lus10037499.g ID=Lus10037499.BGIv1.0 annot-version=v1.0 MASPETATHRRPPSATFRYLLREQRLACFLSGFTLAALFFHTFPIPTTTTATPSEETTTGFSDGAVPDPMSEAVLATRRVLIESSVGGKVPQGLKRKGSR ILVTGGAGFVGSHLVDRLIGRGDSVIVIDNFFTGRKENLMHHFGNHKFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPTNVAGTLNMLGLAKRVGA RLLLTSTSEVYGDPLQHPQSETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGIEVRIARIFNTYGPRVGPDGGPADVHRRRPCGEQLRSAGAEEGAD DGVEGLVRLMEGEHIGPFNLGNPGEFTMLQLAEVVQETIDPKARIEFRPNTEDDPHKRKPDITRAKELLGWEPTVSLRKGLPMMVTDFRQRIFGEQKAFS A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10037499 [exp]	0	1
					Lus10017410 [exp]	2.8	0.7225
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	4.1	0.7241
					Lus10041736 [exp]	8.5	0.6009
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	8.7	0.6730
					Lus10028095 [exp]	11.3	0.6386
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	13.1	0.5551
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	13.4	0.6212
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	22.0	0.5647
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10022646 [exp]	25.9	0.5329
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	26.3	0.5433

Compare expression of checked genes

Lus10037499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.