Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15900 749 / 0 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 702 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 113 / 7e-28 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 113 / 3e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 110 / 2e-25 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 107 / 7e-25 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G13480 104 / 1e-23 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 102 / 9e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 100 / 3e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 100 / 5e-22 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006511 [exp] 950 / 0 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10024785 [exp] 509 / 8e-178 AT4G15900 456 / 4e-157 pleiotropic regulatory locus 1 (.1) Lus10001473 [exp] 233 / 9e-73 AT3G16650 219 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 116 / 1e-27 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10026837 [exp] 115 / 3e-27 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 114 / 5e-27 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018458 [exp] 113 / 2e-26 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 113 / 3e-26 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 112 / 5e-26 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G012800 [exp] 822 / 0 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.002G051900 [exp] 112 / 1e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 113 / 2e-26 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 111 / 6e-26 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 110 / 9e-26 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.T125206 [exp] 110 / 1e-25 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 108 / 1e-24 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 103 / 1e-24 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 107 / 2e-24 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 106 / 3e-24 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037500 pacid=23167083 polypeptide=Lus10037500 locus=Lus10037500.g ID=Lus10037500.BGIv1.0 annot-version=v1.0 ATGCCTGCTGCTCCCCTAGAGATGGAGGCAGTTGAGCCGCAGTCGCTGAAGAAGCTCAGTCTTAAATCCCTGAAGCGAGGGCTTGACCTCTTCTCTCCGA CTCACGGCCAAGTCGCTCCTTCTGATCCGGAGAGTAAACGAATTCGCACGAACCACAAGATAGATATGGAGTATAAAGGGATTAAAGCCATTGGTGATAT CTCAGGTCAAAAACCAAACACACGAGGTCAGGAGACTGCAGCTACTTCCAATGCCCTTGCCCTTCCAGGTCCTGAGAGTTCTAAAGATAGAGAAAAGGGG GTGGCTCAAAATGCGCTTGTTGTTGGTCCATCTCTTCAGCCTAGCAGAAAGAGTGAGGGTGGCCTTCCAGGCAGAAGCACCGCTTTGATTTCAACACCCA GTTCATCTCAAAGGAACTTCTCAACTTCTGCCTTGATCGAGAGGATCCCAAGCAGATGGCCTCGTCCTGTCTGGCGTGCCCCATGGAAGAATTACAGGGT TATTAGCGGTCACTTGGGGTGGGTGAGGTCCATAGCATTCGATCCCAGTAATACATGGTTTTGTACTGGTTCAGCCGATCGTACGATTAAGATTTGGGAT GTGGCAAGTGGAAGGTTGAAGTACACATTAACAGGACATATTGAACAAGTACGAGGTCTTGCTGTTAGCCAAAGACATACATACATGTTTTCTGCTGGTG ATGACAAGCTGGTTAAATGCTGGGACCTGGAACAGAATAAGGCGATTAGATCTTATCATGGTCACCTTAGTGGTGTTTACTGTTTGGCTCTTCATCCTAC CATTGACGTTCTGCTGACCGGAGGACGCGATTCTGTATGCCGGGTATGGGATATTCGGACTAAGATGCAAGCATTTGCTTTAGCTGGACATGATAATACA GTGTGCTCGGTTTTCACTCGTCCAATGGATCCCCAAGTGATAACAGGCTCACATGATTCAACCATTAAGTTCTGGGATCTCAGATATGGCAAAACAATGT TAACTTTGACACACCACAAAAAGTCTGTGAGAGCCTTGGCACAGCATCCTACAGAGCACAGTTTTGCATCTGCATCAGCCGATAACATCAAGAAATTTAA TCTTCCCAAGGGAGAATTCATGCACAACATGCTCTCTCAGCAAAAGACCATCATCAATGCAATGGCTGTAAACGAGGACGGAGTTATGGTAACCGGAGGG GACAACGGGAGCTTGTGGTTCTGGGATTGGAAGAGCGGTCACAATTTCCAGCAAAGTCAGACAATTGTACAACCCGGGTCATTGGAAAGTGAAGCTGGCA TATTCGCCGCCTGCTTCGACCTGACGGGTTCGAGGCTTATTACCTGTGAAGCTGACAAGACGATCAAGATGTGGAAGGAAGATGAAAACGCAACCCCGGA GACCCATCCCCTCAACTTCAAGCCACCTAAAGATATTCGCCGGTTTTAG
AA sequence Show only first row Show all	>Lus10037500 pacid=23167083 polypeptide=Lus10037500 locus=Lus10037500.g ID=Lus10037500.BGIv1.0 annot-version=v1.0 MPAAPLEMEAVEPQSLKKLSLKSLKRGLDLFSPTHGQVAPSDPESKRIRTNHKIDMEYKGIKAIGDISGQKPNTRGQETAATSNALALPGPESSKDREKG VAQNALVVGPSLQPSRKSEGGLPGRSTALISTPSSSQRNFSTSALIERIPSRWPRPVWRAPWKNYRVISGHLGWVRSIAFDPSNTWFCTGSADRTIKIWD VASGRLKYTLTGHIEQVRGLAVSQRHTYMFSAGDDKLVKCWDLEQNKAIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRTKMQAFALAGHDNT VCSVFTRPMDPQVITGSHDSTIKFWDLRYGKTMLTLTHHKKSVRALAQHPTEHSFASASADNIKKFNLPKGEFMHNMLSQQKTIINAMAVNEDGVMVTGG DNGSLWFWDWKSGHNFQQSQTIVQPGSLESEAGIFAACFDLTGSRLITCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	0	1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	1.7	0.8660
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	2.8	0.8456
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	3.7	0.8717
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	4.0	0.8272
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	4.2	0.8511
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	4.5	0.8643
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	4.7	0.8389
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	5.7	0.8665
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	5.9	0.8615
AT2G16676			unknown protein		Lus10035139 [exp]	7.1	0.8252

Compare expression of checked genes

Lus10037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.