Plant FIBer expression Database

Lus10037501 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06890 77 / 5e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006514
[exp]
118 / 1e-34 AT3G06890 104 / 2e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G221000
[exp]
85 / 5e-22 AT3G06890 83 / 1e-21 unknown protein
Potri.010G013100
[exp]
78 / 4e-19 AT3G06890 65 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Lus10037501 pacid=23167096 polypeptide=Lus10037501 locus=Lus10037501.g ID=Lus10037501.BGIv1.0 annot-version=v1.0
ATGGGAGGAGGAGGTGAATACTACGACCGGAGGCCCCACCAGTACCAAGCCCATCCTCCCCCGCCCATGGGATTCGTCGGCGGCGGCGGAGGGGGCACTC
CCCACGGGATCATACTCGCCGTAGTCGTCTGCATTGTGGTCCTAGCTCCCTTCATCTTCGGCGACTCAGGCGAAGTCATTACCGAAGCAATCGCGGAGCT
CCTCAGTCCGCTCGGACTCCTCCTTCTACCGATCTTCCTCCTGTTGACCATCCAGTTCCTCTCCTCCGACCGCGGATCTTTCGTCTCCGCAATTTTCTCC
ACCGGAGAGCCTCAGAGCTTCCACCGAGTGAGCGGATCCCCCGTCGGAGTCGCCTTGTTCCTTTTCCTAGTGTTGTTTCTGCTGTATAACCGTATGTCCA
TATTCGGCGGCGACGATGATTCTGACGATTGA
AA sequence
>Lus10037501 pacid=23167096 polypeptide=Lus10037501 locus=Lus10037501.g ID=Lus10037501.BGIv1.0 annot-version=v1.0
MGGGGEYYDRRPHQYQAHPPPPMGFVGGGGGGTPHGIILAVVVCIVVLAPFIFGDSGEVITEAIAELLSPLGLLLLPIFLLLTIQFLSSDRGSFVSAIFS
TGEPQSFHRVSGSPVGVALFLFLVLFLLYNRMSIFGGDDDSDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06890 unknown protein Lus10037501
[exp]
0 1
AT2G34520 RPS14 mitochondrial ribosomal protei... Lus10034657
[exp]
1.4 0.9039
AT4G23885 unknown protein Lus10001827
[exp]
7.1 0.8751
AT5G66430 S-adenosyl-L-methionine-depend... Lus10036548
[exp]
11.2 0.7802
AT3G30380 alpha/beta-Hydrolases superfam... Lus10035148
[exp]
11.6 0.7769
Lus10010684
[exp]
12.5 0.8709
AT4G35210 Arabidopsis protein of unknown... Lus10025122
[exp]
15.0 0.8576
AT2G36100 CASP1 Casparian strip membrane domai... Lus10021332
[exp]
15.2 0.8644
AT3G12600 ATNUDT16 nudix hydrolase homolog 16 (.1... Lus10026164
[exp]
15.9 0.7454
AT5G55630 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE... Lus10001912
[exp]
16.1 0.8579
AT2G18390 HAL, ARL2, TTN5... TITAN 5, HALLIMASCH, ARF-LIKE ... Lus10026383
[exp]
21.7 0.8664

Lus10037501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.