Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49060 333 / 2e-113 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G57340 230 / 6e-73 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 163 / 8e-48 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G17830 76 / 8e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 71 / 2e-13 DNAJ heat shock family protein (.1) AT1G80030 71 / 2e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT5G18750 69 / 1e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G59610 67 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G06778 67 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1) AT3G04980 69 / 2e-12 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006515 [exp] 569 / 0 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10019421 [exp] 207 / 5e-64 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030079 [exp] 207 / 6e-64 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 205 / 1e-61 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10031336 [exp] 78 / 1e-15 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10040777 [exp] 76 / 2e-15 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10031908 [exp] 76 / 5e-15 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10016510 [exp] 74 / 1e-14 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10002852 [exp] 74 / 2e-14 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013200 [exp] 370 / 2e-127 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.006G153700 [exp] 211 / 1e-65 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.016G120000 [exp] 77 / 3e-15 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G072700 [exp] 71 / 7e-14 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.003G031800 [exp] 71 / 2e-13 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 71 / 2e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 71 / 3e-13 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.007G094900 [exp] 70 / 6e-13 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 69 / 1e-12 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.010G122300 [exp] 68 / 2e-12 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF09320 [flax] [poplar] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Lus10037502 pacid=23167208 polypeptide=Lus10037502 locus=Lus10037502.g ID=Lus10037502.BGIv1.0 annot-version=v1.0 ATGGGCGGGAACAAAGACGAGGCGCTGAGATGTATTTCGATCGCGGAGGAGGCTATTGCGTCCGGCAATAAACTGCGCGCCTTAAGATTCATCAGATTTG CGCAACGACTGAATCGAGACTCGCCTGTTGATGAGCTCCTTGCTGCATGTGAGAGATTAGGTTCCGTCAGTGGAAGAAATGTCAATGATGAAAAGAGGCC TAGTATTCCCGGTGCAGGAAAATTAGGTGAGGGATCAGTTGGGGACAGGAGTTATAGTGAAGAGCATTTGCAATTGATTAGACGGATAATTAGGACCAAA GATCACTACGCGATTCTTGGAGTGGAGAAAACTTGTTCCGTAGATGAGATTAGGAAGGCGTATAGGAAATTGTCTCTGAAAGTTCACCCTGATAAGAACA AGGCACCTGGAGCCGAGGAAGCATTCAAGAAAGTCTGTGCAGCTTTTAAGTGCCTGAGTGATAGTGAATCGAGGAGGCAGTATGATCATGTGGGTTTGGT AAGGGGGTTCGAGTATAGCCAACGGAGCAATGTTAGGCCGAGAAGGACGAGGAGAGATTTTAATGGTTATTATGACAATGATGTTGATATTAATGAGATG TTCGGCCGGCATTTCAATCAGAATGATCAATACAGGGCATATCATGCGTATAGGAGTAGGGAAAGGGCAACTGAAGACACAGAGGAATTTCATGGAAGGG GGCCTGGCTGTTTTATACTGTTACAGATACTGCCATTTCTGTTGATCTTCTTGCTAGCGTCTCTACCCTTTTCAGAGCCGGAATATTCCTTGCATAAGAA CTACTCCTATCAGATCCCAAAGACAACTGAGAAGCAAGGGGTTGAGTACTTTGTCAAATCTTCAGCGTTTGATGAAAGCTTCCCTCTTGGAAGCACTGCT CGAAGAAAAATCGAAAACAGTGTGATTATGGAATATAAAAACTTGCTATGGCGGCACTGTCACATTGAAATGCAGAGGCGTCATTGGAATAAGGTTTTGC CCACGCCTAACTGCAATAAGCTGCACAATCTTGGATTGGCATGA
AA sequence Show only first row Show all	>Lus10037502 pacid=23167208 polypeptide=Lus10037502 locus=Lus10037502.g ID=Lus10037502.BGIv1.0 annot-version=v1.0 MGGNKDEALRCISIAEEAIASGNKLRALRFIRFAQRLNRDSPVDELLAACERLGSVSGRNVNDEKRPSIPGAGKLGEGSVGDRSYSEEHLQLIRRIIRTK DHYAILGVEKTCSVDEIRKAYRKLSLKVHPDKNKAPGAEEAFKKVCAAFKCLSDSESRRQYDHVGLVRGFEYSQRSNVRPRRTRRDFNGYYDNDVDINEM FGRHFNQNDQYRAYHAYRSRERATEDTEEFHGRGPGCFILLQILPFLLIFLLASLPFSEPEYSLHKNYSYQIPKTTEKQGVEYFVKSSAFDESFPLGSTA RRKIENSVIMEYKNLLWRHCHIEMQRRHWNKVLPTPNCNKLHNLGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	0	1
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	1.0	0.8017
AT1G47820			unknown protein		Lus10035088 [exp]	5.5	0.7827
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	8.5	0.7620
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	9.1	0.6680
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	10.4	0.7611
AT4G04614			unknown protein		Lus10006902 [exp]	13.0	0.7544
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	17.0	0.7424
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10022431 [exp]	19.6	0.6712
AT5G41620			unknown protein		Lus10003027 [exp]	21.5	0.7103
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	21.9	0.7281

Compare expression of checked genes

Lus10037502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.