Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 404 / 5e-140 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006516 [exp] 544 / 0 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 412 / 1e-143 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 412 / 2e-143 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 410 / 9e-143 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 404 / 9e-140 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G023500 [exp] 463 / 1e-163 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 450 / 2e-158 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 426 / 5e-149 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 423 / 6e-148 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029300 [exp] 255 / 2e-85 AT1G09020 287 / 3e-95 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G029900 [exp] 217 / 7e-71 AT1G09020 249 / 1e-81 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10037503 pacid=23167270 polypeptide=Lus10037503 locus=Lus10037503.g ID=Lus10037503.BGIv1.0 annot-version=v1.0 ATGGCTCCGCTTTGGGACTTCAGCCGGGGCCAGTTTGTTGGAGTGCTTAGTGCTTTCGATTTCATCTTAATATTGAGAGAGCTTGGCAATCATGGGTCGA ATTTGACGGAGGAGGAACTAGATACTCACACTATATCAGCTTGGAAAGAAGGAAAATCATATCTTAGTAGACAAATTGATGGGCAAGTTGGAGCTGTTGC TAAACAACTAATCCATGCGGGGCCATATGACAGCTTGAAAGAGGTTGCTCTGAAGATATTGCAAAATGATATCTGCACCGTACCCATCATCCATTCATCA TCAGATGATGGTTCATTTCCTCAGCTACTACATCTTGCTTCACTATCTGAGATACTGAAATGTATTTTCAGGTACTTTAGACATTGCTCTGGCTCTTTGC CTGTACTGCAATTACCCATATGTGCGATTCCATTGGGCACTTGGGTCCCAAAGATAGGGGAGTCAAATATTCGACCTTTAGCAATGTTGAGACCCAGTGC TTCCCTTAGTGCTGCTTTAAACTTGTTGATTCATGCTCAAGTAAGTTCAATACCGATAGTTGACGACAATGATTCATTACTTGACATATATTGTCGGAGT GATATAACTGCTCTAGCAAAAGACAGAATATACACACACATTAATCTTAACGAAATGACCATTCATCAGGCCTTGCAATTGGGGCAAGACTCGTTTTCCC CATACGAATCAAGAAGCCAGAGATGCCAGATGTGCTTACGCACCGATTCATTGTTCAAAGTGATGGACCAGTTTTCTAACCCAGGGGTAAGGCGAGTAAT CATAGTAGAAGCTGGAAGCAAACGTGTGGAAGGCATCGTTACCCTGAGCGACATTTTCAGATTCTTGCTTGTTTAG
AA sequence Show only first row Show all	>Lus10037503 pacid=23167270 polypeptide=Lus10037503 locus=Lus10037503.g ID=Lus10037503.BGIv1.0 annot-version=v1.0 MAPLWDFSRGQFVGVLSAFDFILILRELGNHGSNLTEEELDTHTISAWKEGKSYLSRQIDGQVGAVAKQLIHAGPYDSLKEVALKILQNDICTVPIIHSS SDDGSFPQLLHLASLSEILKCIFRYFRHCSGSLPVLQLPICAIPLGTWVPKIGESNIRPLAMLRPSASLSAALNLLIHAQVSSIPIVDDNDSLLDIYCRS DITALAKDRIYTHINLNEMTIHQALQLGQDSFSPYESRSQRCQMCLRTDSLFKVMDQFSNPGVRRVIIVEAGSKRVEGIVTLSDIFRFLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10006516 [exp]	2.0	0.8693
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	2.0	0.8704
					Lus10005904 [exp]	2.2	0.8759
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	6.7	0.8621
AT3G07180			GPI transamidase component PIG...		Lus10038186 [exp]	6.9	0.8219
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	8.5	0.8602
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	11.1	0.8693
AT1G73350			unknown protein		Lus10042294 [exp]	16.1	0.8501
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	18.0	0.8194
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	18.3	0.8305

Compare expression of checked genes

Lus10037503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.