Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09020 192 / 8e-59 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 56 / 3e-09 5'-AMP-activated protein kinase-related (.1) AT3G01510 51 / 2e-07 LSF1 like SEX4 1 (.1) AT5G03420 49 / 9e-07 5'-AMP-activated protein kinase-related (.1) AT5G39790 45 / 2e-05 5'-AMP-activated protein kinase-related (.1) AT4G16360 42 / 0.0001 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006516 [exp] 372 / 6e-129 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 202 / 1e-62 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 200 / 9e-62 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10015179 [exp] 194 / 2e-59 AT1G09020 735 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10031501 [exp] 175 / 8e-52 AT1G09020 701 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10039076 [exp] 52 / 9e-08 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 51 / 2e-07 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037220 [exp] 50 / 4e-07 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10036706 [exp] 50 / 6e-07 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216800 [exp] 256 / 2e-83 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G023500 [exp] 249 / 1e-80 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 166 / 1e-48 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 164 / 3e-48 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.010G034600 [exp] 52 / 6e-08 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 52 / 7e-08 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.017G125400 [exp] 46 / 7e-06 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.006G005800 [exp] 45 / 2e-05 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G021600 [exp] 44 / 3e-05 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.016G006400 [exp] 44 / 4e-05 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037504 pacid=23167361 polypeptide=Lus10037504 locus=Lus10037504.g ID=Lus10037504.BGIv1.0 annot-version=v1.0 ATGGAATCCGGTCGGGAAGCCGGTGGCGGAGTTGCATCCGGGACGGTGTTGATGCGTTTTGTGTGGCCTCATGGTGGTCGGAGCGTTTTCATCACCGGTT CTTTTAACGGATGGGGTGAGCTCGTTGCTATGGCCCCTGTTGAAGGTTCCCCTACAGTGTTTCAGACAATTTGCAGTGTAACTCCTGGTTACCACTTGTA CAAGTTTCTTGTTGATGGGGAGTGGCGGCATGACGAACACCAATCTTGCGTTACCAGTGAATATGGGATGGTAAATACGCTCCTCTTCCCAGTTGATGCC AACTACAATCCTACTATAGGGTCAGAGTTACATGCGAACATGGAGTTGGACAATGAACAGTTCAGGCGTGTGGTTCACGTCTCAGATGGCACCTTGAATG AGGCCCTGCCATTGATATCAGAAGCAGATGTGCAGGCTTCTCGCCATCGTATTTCTGCATTTATGTCTACGCACACTGCTTATGAGTTACTTCCAAAGTC CGGCAAGCTTGATATTTTCAAGCTTCTTTTTCTTCTTCTAATCAGTACTTGTAGCTTACAGGTTGTGGCACTGGATGTTGACCTACCGGTGAAGCAAGCA TTTCATATATTATATGAGCAGGTGAGAGGTTGGCCTTTCATAGTCCTTTAA
AA sequence Show only first row Show all	>Lus10037504 pacid=23167361 polypeptide=Lus10037504 locus=Lus10037504.g ID=Lus10037504.BGIv1.0 annot-version=v1.0 MESGREAGGGVASGTVLMRFVWPHGGRSVFITGSFNGWGELVAMAPVEGSPTVFQTICSVTPGYHLYKFLVDGEWRHDEHQSCVTSEYGMVNTLLFPVDA NYNPTIGSELHANMELDNEQFRRVVHVSDGTLNEALPLISEADVQASRHRISAFMSTHTAYELLPKSGKLDIFKLLFLLLISTCSLQVVALDVDLPVKQA FHILYEQVRGWPFIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	0	1
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	3.5	0.8106
AT1G66310			F-box/RNI-like/FBD-like domain...		Lus10034161 [exp]	5.7	0.8056
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	6.9	0.7652
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	7.5	0.8252
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	9.1	0.8255
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	22.2	0.7492
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	22.7	0.7997
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	24.5	0.7591
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	27.5	0.7809
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	29.1	0.7898

Compare expression of checked genes

Lus10037504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.