Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15720 587 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 354 / 2e-115 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 349 / 8e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14050 345 / 3e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 343 / 4e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 343 / 5e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 342 / 2e-111 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 340 / 1e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 338 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 338 / 8e-109 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006517 [exp] 942 / 0 AT4G15720 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 357 / 6e-117 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 352 / 7e-115 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 338 / 7e-109 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 338 / 7e-109 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 342 / 9e-109 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 337 / 5e-108 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 335 / 9e-108 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 335 / 1e-107 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217000 [exp] 714 / 0 AT4G15720 678 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 360 / 2e-118 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 360 / 4e-118 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 359 / 8e-118 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 361 / 1e-117 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 358 / 6e-117 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 356 / 1e-116 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 355 / 2e-116 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 352 / 5e-115 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 359 / 8e-115 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037505 pacid=23167256 polypeptide=Lus10037505 locus=Lus10037505.g ID=Lus10037505.BGIv1.0 annot-version=v1.0 ATGTATTCAAAGTTGTTCGAGACTTCAGTTGCTCCGAATGATTTCACTGTGTCTACAGTTATCAACGCTTGTTCGATTCTAGCGGAACTTGAAATCGGGA AGAAGATTCATGCCCACGCTGAAGTCATGGGCTTTGGAAGCAACCTTGTGGTGTGTTCTTCATTGGTTTGCATGTACGGGAACTGTAATGATGTTGATGT CGCTAGGTCAGTTTTCAATTCTATGGATTATAAGAACATTGTCACTTGGACTTCAATGATAGCAGCGTGTGCACAGAACGGAAGAGGGAGTGAAGCACTT CAAGTTTTCAGGAATTTCAATTCCGGAGCAGGCGAAGAACGTGCAAACGATTTCATGTTGACTAGTGTGATTAATGCTTCTGCAAGCTTGGGGAAGCTTG CTGCAGGGAGAGCATCACACGGAGCAGTAATTCGTGGCGGGCATGAGGTAAACGATGTAGTCACGAGTTCACTTGTCGATATGTATGCCAAATGTGGTTG CTTTGATTACTCTTGGAAGATTTTCAAGAGAATCCGGTACCCTTCTGTGGTTCCGTACACTTCAATGATTGTAGGTGCTGCTAAGTATGGGCTTGGGAAG TTGTCCATTGAGCTATTCAAGGAGATGATTGATAGAGGAGTCGAGCCAAATGATGTAACATTTGTTGGGGTGTTGCATGGATGTAGTCACTCAGGGCTTG TGAATGAAGGGCTCGAGTTTTTAAACTCGATGCTCGAGAAATACGGAGTAAACCCTGATGCAAAGCATTATACTTGCGTTGTTGATATGTACTGCCGAGT TGGTCGACTTGATGAAGCTTATAAATTGGCTAAATTGATTCGTGTAGGAACTGTTGAAGGGGCTCTGTTGTGGGGCACGCTGCTTTCGGCCAGTAGGCTT CACGGACGGGTAGACATTGCCGTTGAAGCTAGCAAGAGGTTGATAGAATCCAAACAGCAAGTAGCGGGTGCATACGTAACGATGTCGAATGCTTATGCAT TGGCAGGGGAGTGGGAGAATGCTCATGGAATGAGATCTGAAATGAAGCGGGCTGGCGTGGTGAAGGATCCTGGGTGTAGCTGGATCGAGATTCGAGAATC GACGTTTGTGTTCCATGCTGGCGATCTTTCGTTCGGAAGCGGGAAAGAGGTGTTGAGTAAGCTGAAGGAGTTGGAAGGTAAGATGAAGGAGAGAGGGTAT TTGGGTGGCAGTGTGGGTTTGGTTTTTGTAGAGGTGGAACAAGAAGCCAAGGAAGAGATTGTTAGTCTTCACAGTGAGAGATTAGCCTTGGGGTTTGGGT TGATCACCGTTCCTAAAGGAACCACCATTAGAATCATGAAGAACTTGAGGATTTGCAACGACTGTCATGAAGCGTTCAAGGTAATCAGTGGGATTGTAGA TAGAGATCTTGTGGTTCGAGATGTGAACAGATTCCATCATTTCAAGAATGGTTCTTGCAGTTGCAGGGATTTCTGGTAA
AA sequence Show only first row Show all	>Lus10037505 pacid=23167256 polypeptide=Lus10037505 locus=Lus10037505.g ID=Lus10037505.BGIv1.0 annot-version=v1.0 MYSKLFETSVAPNDFTVSTVINACSILAELEIGKKIHAHAEVMGFGSNLVVCSSLVCMYGNCNDVDVARSVFNSMDYKNIVTWTSMIAACAQNGRGSEAL QVFRNFNSGAGEERANDFMLTSVINASASLGKLAAGRASHGAVIRGGHEVNDVVTSSLVDMYAKCGCFDYSWKIFKRIRYPSVVPYTSMIVGAAKYGLGK LSIELFKEMIDRGVEPNDVTFVGVLHGCSHSGLVNEGLEFLNSMLEKYGVNPDAKHYTCVVDMYCRVGRLDEAYKLAKLIRVGTVEGALLWGTLLSASRL HGRVDIAVEASKRLIESKQQVAGAYVTMSNAYALAGEWENAHGMRSEMKRAGVVKDPGCSWIEIRESTFVFHAGDLSFGSGKEVLSKLKELEGKMKERGY LGGSVGLVFVEVEQEAKEEIVSLHSERLALGFGLITVPKGTTIRIMKNLRICNDCHEAFKVISGIVDRDLVVRDVNRFHHFKNGSCSCRDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	1.4	0.7986
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	2.4	0.7852
AT1G57540			unknown protein		Lus10029982 [exp]	3.7	0.7374
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	4.2	0.7486
AT2G21290			unknown protein		Lus10018053 [exp]	6.6	0.7828
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	8.5	0.7676
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	9.1	0.7951
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	10.6	0.7305
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	11.2	0.7638
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029815 [exp]	13.2	0.6653

Compare expression of checked genes

Lus10037505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.