Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47820 342 / 4e-105 unknown protein AT1G09050 339 / 3e-103 unknown protein AT1G09040 335 / 7e-102 unknown protein AT1G55050 307 / 2e-91 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006519 [exp] 1222 / 0 AT1G09040 350 / 1e-108 unknown protein Lus10029906 [exp] 344 / 7e-103 AT1G09040 385 / 6e-117 unknown protein Lus10004495 [exp] 338 / 7e-101 AT1G09050 376 / 1e-113 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210200 [exp] 571 / 0 AT2G47820 375 / 4e-117 unknown protein Potri.010G023900 [exp] 515 / 1e-170 AT2G47820 381 / 2e-119 unknown protein Potri.005G027300 [exp] 401 / 3e-126 AT1G09040 386 / 1e-119 unknown protein Potri.013G019300 [exp] 397 / 1e-124 AT1G09040 384 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037506 pacid=23167355 polypeptide=Lus10037506 locus=Lus10037506.g ID=Lus10037506.BGIv1.0 annot-version=v1.0 ATGGATGAAATTCAGCTGGATTGCATTGGAAGTCTTAATGCCAATGATGAGTCTGCAGAGAAGTCTCTGCCTTTAGAACCTCCTGCCATTTGTGATTACG ACAGGGAGAGTAGTGATGAGTTGCTGCCTCGAATCGGTGATCAGTACCAGGTTCCAATCCCATCTCTCGTTACCAAATCCCTCTACCTCTCACAGACGCA ACAACAACCGGCCAGTTTTTCGGTGGGGTTGCCGATTTCGATAATGTGGATCAATGAGCAAGGCGAGACGATCAAGAAGGAACTTGAGGACTTCCTTAAT GATTTGGCTGATTCTGTTAAATCTGAGAGCTTTGAAGTGGATACATTTACAGATAGCGGTGTCAAAGCTATGGATGTTGATGAAGTGGTGAAATGTGGGA GCAGAAGTTACCATTTGGTTCCTGGTGATTCTGATGAAGAGTGGAATGATGTGGATCAGGCGAGTTTTGTGCTAGGTTTATATATTTTCGGGAAGAATCT AGTTCAAGTGAAGAATTTTGTTGAGACAAAGTCAATGGGTCAGATACTTTCCTTTTACTATGGGAAATTCTATAGGTCTCATAGATATCGTAGATGGTCC GAGTGTGGAAAACTCAAAGGCAGGAAAAGGATGTTTGGCCAAAGGATCTTTACCGGATCGAAGCAGCACGAGCTCTTGTCTCGTTTGATTCCTCGTGTAT CCGAGGAATCCCAGATCACTTTGCACGAGGTGACTAAGTCTTTCGGAGAGGGAAAGACAATGCTAGAAGAATATGTATTTGCTATAAAGGCTGAAGTTGG CTTAAATGCCCTTGTAGAGGCAGTTGGTATTGGTAAAGGGAAGCAAGACCTCACAATTACTGCCATGGATTCCCTTAGGTCGAATCATGTTACTGCAGTT CGACCAGAGATACCTGTTGGCAAAGACTGCTCAAAGCTAACACATTTAGATATAGTCAAAATTCTAACGGGAGGTCATCGGCTCAGCAAGGCCAGATCGA ATGATATCTTCTGGGAAGCGGTTTGGCCTCGATTACTTGCTCGAGGATGGCGTTCGGAGCAACCAAAGGATGGGTTTTTCAGGAACTCTCTGGTCTTTAT AGTCCCTGGTGTTAAGAAGTTTTCAAGAAGGAAACTAGTGAAAGGAGACCACTACTTTGATTCAGTCACTGATGTCTTGAACAAAGTTGCTTCTGATCCA TCGCTTCTTGAGCTTGATGGTATTGAAAACACCAACGAAGCAAATGGATGGGACAAAGGTACAAACGACCAAGAAGAAGATTCCAATGGTAAGGAGGAGC GCCATTGTTACCTCAAACCGAGGAGCTCGTCAGTTCATCACAATGGTTTAAGTTTCACAATTGTTGACACAAGTCAAAAAGGCAAAATAACTCAATTAAG AAGGTTGCCAGATGAGGTGAGGAATCTTTCCTTCCCCATAAGAGATTCTGATGATAGTAGCGACGACCATTCTTCTTCAGAAGATTCCATGGACGAATCA TACTCGGAAGGTAATTCAAGTGTTGATGGGGATGAAGTAGCTAAGAGGAAATTTTCAAAGTCAGTCTCTTTTGACAGCCACTTTCATGGAAATTTCACTG CGAAGCAGAATTTCTTTGTAAATGGCAAGGCAGCAGCAAGTATGTCAGAAAATGGAAGAGCCAATAATGAGACTACCATCATGCAAATGCAGCCAAGAAA GAACGCAAATCCTCAAGCTATCAGGAAAAGAAAGCCCAGCAATGGAAATGCTTTAGCCGCAGCTGCAAAACGGCAGCAGCAACAGCAGCAAGCATTGCCT TGTGACTCAAGCAAGGTGCATTTCCGAACATATGATGACTTAGTTGGTACATTTCAGAAATTACCCCCGAGTAGATCTTCATCTAGAGGAAACAGTCCAA ATAGCAGCGATGTGTGTCACATCAGCACTACTTCTTCAGGTGCCGAGCATTCTAATGAACACCCTCCTCAATCCACCAAGGCATTGATTGACCTGAATAT ACCTGTTCCTCAAAGCACAGAACTTGAATGTCCGATGATGGAAATAGAAGAAAGAAAGAAGAATGAGCAGCCAGAGGATTCGGAGATCTCAAAGCCTTCA ACTTTAGCTTGTTCGGATTCTAATTCTCAGCAGCAACAACCTGAGACGAGCTCGAGAAGACACAGTACTAGAAACCGTCCATTGACGACCAAGGCATTGG AGGCTCTTGCTTGTGGGTTCTTAAGCTTCACGCCCAAGAAAGAACCCCGGAAATCGAAACAACGTTCTAGACGATTGAAGAGTAAGGGTGGAGTAGTCAG CAGTAGTAGTAACATTGGCTCCGAGATTGCGGATTTCAAAGGCGGAGATGAACCAGAAAGTTGTGTGACCAAAGGTAGCAGCGGCATTGTTGTTGATGAG CTCCAAGGAGTGAACACCATTGAATTTGAATGA
AA sequence Show only first row Show all	>Lus10037506 pacid=23167355 polypeptide=Lus10037506 locus=Lus10037506.g ID=Lus10037506.BGIv1.0 annot-version=v1.0 MDEIQLDCIGSLNANDESAEKSLPLEPPAICDYDRESSDELLPRIGDQYQVPIPSLVTKSLYLSQTQQQPASFSVGLPISIMWINEQGETIKKELEDFLN DLADSVKSESFEVDTFTDSGVKAMDVDEVVKCGSRSYHLVPGDSDEEWNDVDQASFVLGLYIFGKNLVQVKNFVETKSMGQILSFYYGKFYRSHRYRRWS ECGKLKGRKRMFGQRIFTGSKQHELLSRLIPRVSEESQITLHEVTKSFGEGKTMLEEYVFAIKAEVGLNALVEAVGIGKGKQDLTITAMDSLRSNHVTAV RPEIPVGKDCSKLTHLDIVKILTGGHRLSKARSNDIFWEAVWPRLLARGWRSEQPKDGFFRNSLVFIVPGVKKFSRRKLVKGDHYFDSVTDVLNKVASDP SLLELDGIENTNEANGWDKGTNDQEEDSNGKEERHCYLKPRSSSVHHNGLSFTIVDTSQKGKITQLRRLPDEVRNLSFPIRDSDDSSDDHSSSEDSMDES YSEGNSSVDGDEVAKRKFSKSVSFDSHFHGNFTAKQNFFVNGKAAASMSENGRANNETTIMQMQPRKNANPQAIRKRKPSNGNALAAAAKRQQQQQQALP CDSSKVHFRTYDDLVGTFQKLPPSRSSSRGNSPNSSDVCHISTTSSGAEHSNEHPPQSTKALIDLNIPVPQSTELECPMMEIEERKKNEQPEDSEISKPS TLACSDSNSQQQQPETSSRRHSTRNRPLTTKALEALACGFLSFTPKKEPRKSKQRSRRLKSKGGVVSSSSNIGSEIADFKGGDEPESCVTKGSSGIVVDE LQGVNTIEFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09050			unknown protein		Lus10037506 [exp]	0	1
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	2.6	0.9328
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	3.2	0.9163
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	3.9	0.9187
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	4.5	0.9045
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	4.9	0.8980
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	5.1	0.9241
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	6.2	0.8957
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	7.9	0.9050
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	13.9	0.9050
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	14.5	0.8819

Compare expression of checked genes

Lus10037506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.