Plant FIBer expression Database

Lus10037507 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21400 156 / 1e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006520
[exp]
346 / 2e-123 AT3G21400 167 / 7e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G210100
[exp]
209 / 2e-69 AT3G21400 204 / 1e-67 unknown protein
Potri.010G024000
[exp]
0 / 1 AT3G21400 0 / 1 unknown protein
PFAM info
Representative CDS sequence
>Lus10037507 pacid=23167347 polypeptide=Lus10037507 locus=Lus10037507.g ID=Lus10037507.BGIv1.0 annot-version=v1.0
ATGGGTCAGGCATTTCGTCGAGCATCTGGCAGACTCCGAGTTCCCGATCCATCTCCCAAGGTGGTTGCCGAACGTAGACCGCCGGGAACTCCCGCCGACA
AGGTTGAGGAGGTCTCTAGGAAGGCTACCCAGCTCAACGATCAGAGTATTCATGCTGCTGATGATGATCCAAGATTTAATGCTGAGAATGTCCTTGAAGA
AAAGGATCCACAGTTTGATGCAATGCTCGGCCAAATGGTTGGAAGAATCAAAACAAAGCCTGGTGGGAAACCTGAGATGGGCGAGGCGACTATAGTAGAA
AGGTCTCACAAGCCATTGCCAAAGTTGCGGAATACAAAAGCCAATGCTGGCAGATATGAAGAGAGACCTGTCCCCCCAGGAACCCTGAACGTGGCTCAGC
TCCGCCACATACTCAAACTGCACGCAGGCAAGGGCGGTGAAGGAGAAAAGGAAGGGTCGGTCAATGTCCAACAAATATCTCAACAGTTCCGGCTTGAAGT
AGAACAAGTGAACAAGTTCCTGCAGTTTGTGTCACTTCCCCCGGAGGATAGCACGAAAAAGGACGTCCAATAA
AA sequence
>Lus10037507 pacid=23167347 polypeptide=Lus10037507 locus=Lus10037507.g ID=Lus10037507.BGIv1.0 annot-version=v1.0
MGQAFRRASGRLRVPDPSPKVVAERRPPGTPADKVEEVSRKATQLNDQSIHAADDDPRFNAENVLEEKDPQFDAMLGQMVGRIKTKPGGKPEMGEATIVE
RSHKPLPKLRNTKANAGRYEERPVPPGTLNVAQLRHILKLHAGKGGEGEKEGSVNVQQISQQFRLEVEQVNKFLQFVSLPPEDSTKKDVQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21400 unknown protein Lus10037507
[exp]
0 1
AT2G42520 P-loop containing nucleoside t... Lus10000848
[exp]
3.7 0.8726
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10042246
[exp]
4.0 0.9005
AT1G51160 SNARE-like superfamily protein... Lus10027541
[exp]
4.2 0.8971
AT2G15000 unknown protein Lus10020971
[exp]
4.2 0.8729
AT3G21400 unknown protein Lus10006520
[exp]
4.9 0.8708
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) ... Lus10027388
[exp]
6.0 0.8707
AT1G11680 EMB1738, CYP51A... embryo defective 1738, CYTOCHR... Lus10001713
[exp]
9.8 0.8896
AT1G33250 Protein of unknown function (D... Lus10008293
[exp]
11.2 0.8753
AT3G20060 UBC19 ubiquitin-conjugating enzyme19... Lus10019034
[exp]
11.4 0.8643
AT5G46570 BSK2 BR-signaling kinase 2 (.1) Lus10031967
[exp]
13.2 0.7987

Lus10037507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.