Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48970 462 / 9e-165 Mitochondrial substrate carrier family protein (.1) AT3G21390 422 / 7e-149 Mitochondrial substrate carrier family protein (.1) AT4G01100 129 / 1e-34 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G55640 115 / 3e-29 Mitochondrial substrate carrier family protein (.1) AT2G37890 114 / 3e-29 Mitochondrial substrate carrier family protein (.1) AT3G53940 111 / 1e-27 Mitochondrial substrate carrier family protein (.1) AT3G51870 109 / 6e-27 Mitochondrial substrate carrier family protein (.1) AT1G14560 108 / 6e-27 Mitochondrial substrate carrier family protein (.1) AT4G32400 108 / 1e-26 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G01500 104 / 6e-25 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006521 [exp] 570 / 0 AT5G48970 527 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 132 / 2e-35 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 130 / 1e-34 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 129 / 3e-34 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 124 / 1e-32 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10000504 [exp] 116 / 5e-30 AT4G15780 293 / 3e-100 vesicle-associated membrane protein 724 (.1) Lus10022597 [exp] 116 / 2e-29 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 114 / 6e-29 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 110 / 1e-27 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210000 [exp] 483 / 8e-173 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 477 / 2e-170 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 132 / 1e-35 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 130 / 1e-34 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 127 / 7e-34 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 127 / 8e-34 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 120 / 4e-31 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 118 / 2e-29 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 112 / 3e-28 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 111 / 8e-28 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin CL0445 [flax] [poplar] PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10037508 pacid=23167065 polypeptide=Lus10037508 locus=Lus10037508.g ID=Lus10037508.BGIv1.0 annot-version=v1.0 ATGAAAGAGCATATGAAGCATATTGCTGATCATGCTGATGAAATTGAGAAGTTGCTCAAAGTAAAAGCTCAGGTCTCAGAAGTCAAAAGCGTAATGTTAG GGAACATTGACAAGGCCATCGAGAGAGGAGAGAACATAACCAATCTTGTCGACAAGACCGAGAACCTGCGTGATCAGGTTCAGCTGGAGCCTACTACTTC TTGGGCTTTGATCAACAGAAACGTAGCTGCTCCATCCAAGTATACAGGAATGCTGCAAGCCAGCAGGGATATTCTGAGAGAAGAAGGCTTAGCGGGGTTT TGGCGTGGTAACGTCCCAGCTCTTCTCATGGTTATGCCATACACTGCCATACAATTTGCCGTATTACACAAGTTGAAATCATTTGCTTCTGGATCTTCTA AGGCAGTGGATCACATTCATTTGAGTCCCTATTTGTCCTACGTCAGTGGTGCTTTAGCAGGATGTGCAGCTACTGTTGGATCATATCCATTTGATCTCCT ACGCACCATTTTAGCTTCTCAAGGTGAACCCAGGGTGTATCCCACGATGAGATCTGCATTTGCGGATATATTCAGTAAACGCGGATTTAAAGGCTTATAT GCAGGATTGTCCCCAACACTAGTCGAGATTGTACCTTATGCAGGGCTTCAGTTTGGTACCTATGACACTTTCAAGCGCTGGGCAATGGAGTGGAATAATC GCAGATCCACCACCATGGCCACTGATGATAACCTTTCGAGCTTCCAGCTTTTTATTTGCGGAATAGCTGCTGGGACATGCGCTAAACTTATTGAAGGACT TCAGAGGCACCCGAAATACGGTGCAAGGGTCGAACGCCATTCTTACAGAAACATGTTCGATGGCCTACGCCAAATCATGCTAGCAGAAGGCTGGGGTGGT CTGTACAAGGGCATTCTCCCGTCCACGGTGAAGGCTGCTCCGGCTGGTGCCGTAACGTTTGTGGCTTACGAAATGGCGTCTGATTGGCTAGAATCTGTTT GGACTTGA
AA sequence Show only first row Show all	>Lus10037508 pacid=23167065 polypeptide=Lus10037508 locus=Lus10037508.g ID=Lus10037508.BGIv1.0 annot-version=v1.0 MKEHMKHIADHADEIEKLLKVKAQVSEVKSVMLGNIDKAIERGENITNLVDKTENLRDQVQLEPTTSWALINRNVAAPSKYTGMLQASRDILREEGLAGF WRGNVPALLMVMPYTAIQFAVLHKLKSFASGSSKAVDHIHLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPRVYPTMRSAFADIFSKRGFKGLY AGLSPTLVEIVPYAGLQFGTYDTFKRWAMEWNNRRSTTMATDDNLSSFQLFICGIAAGTCAKLIEGLQRHPKYGARVERHSYRNMFDGLRQIMLAEGWGG LYKGILPSTVKAAPAGAVTFVAYEMASDWLESVWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48970			Mitochondrial substrate carrie...		Lus10037508 [exp]	0	1
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10002682 [exp]	8.1	0.7648
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	9.2	0.8387
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	9.4	0.8034
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	10.1	0.8347
AT2G45520			unknown protein		Lus10009304 [exp]	11.0	0.7941
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	12.3	0.8201
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	13.5	0.7932
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	16.1	0.7837
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	18.6	0.7926
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	19.6	0.7900

Compare expression of checked genes

Lus10037508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.