Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15770 325 / 2e-115 RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000507 [exp] 384 / 3e-138 AT4G15770 328 / 1e-116 RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G024400 [exp] 306 / 5e-108 AT4G15770 303 / 1e-106 RNA binding (.1) Potri.008G209600 [exp] 300 / 4e-105 AT4G15770 299 / 6e-105 RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF03657 [flax] [poplar] UPF0113 UPF0113 PUA domain
Representative CDS sequence Show only first row Show all	>Lus10037509 pacid=23167148 polypeptide=Lus10037509 locus=Lus10037509.g ID=Lus10037509.BGIv1.0 annot-version=v1.0 ATGAGGCCGCTGGACGAGGCAGAGACGACCGCCGTCTTCGAGAAGCTCCTGAAGTTCACGGGCAACAACCTGAAGAACCTCATCGAGAACCCAGCGCACG AGGGGACCGAGCAGAACCCCGGCCACTACTGCTTCCGCCTGCAGAAGAACCGCGTCTTCTACGTCAGCGAGTCGCTCGTGAAGCGCGCCACAAACATCAG CAGAAAGAACCTGGTGGCGATGGGGATCTGCGTCGGCAGGTTCACCCACGTCGGCAAGTTCCACCTCACTGTCCAGTGCCTGAATCTGCTGGCAGCCAAC GCCAAGCACAAGGTGTGGCTCAAGCCTACCGCGGAGATGTCGTTCCTGTACGGTAACCACGTCCTGAAGGGAGGCGTCGGAAGGATCACCGACAGCATCG CTCCCGGCGACGGCGTGGTGGTGTTCTCCATGTCCGATATTCCGCTAGGGTTCGGGAACGCAGCGAAGTCGACTCAGGATTCCATGAAGCTAGACCCGAA CGGGATCGTGGTTCACCACCAGTCGGATATCGGTGAGTATTTGAGGATGGAGGATGACCTTTGA
AA sequence Show only first row Show all	>Lus10037509 pacid=23167148 polypeptide=Lus10037509 locus=Lus10037509.g ID=Lus10037509.BGIv1.0 annot-version=v1.0 MRPLDEAETTAVFEKLLKFTGNNLKNLIENPAHEGTEQNPGHYCFRLQKNRVFYVSESLVKRATNISRKNLVAMGICVGRFTHVGKFHLTVQCLNLLAAN AKHKVWLKPTAEMSFLYGNHVLKGGVGRITDSIAPGDGVVVFSMSDIPLGFGNAAKSTQDSMKLDPNGIVVHHQSDIGEYLRMEDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15770			RNA binding (.1)		Lus10037509 [exp]	0	1
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	2.4	0.9541
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	2.8	0.9639
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	4.6	0.9541
AT3G51010			unknown protein		Lus10042347 [exp]	4.9	0.9327
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	7.1	0.9213
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	7.2	0.9461
AT2G27710			60S acidic ribosomal protein f...		Lus10006270 [exp]	9.8	0.9048
AT5G20600			unknown protein		Lus10011961 [exp]	9.9	0.9044
AT2G04390			Ribosomal S17 family protein (...		Lus10029412 [exp]	14.5	0.9197
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Lus10012057 [exp]	14.9	0.9188

Compare expression of checked genes

Lus10037509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.