Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15780 92 / 2e-24 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT1G04750 76 / 1e-18 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 71 / 3e-16 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT2G32670 70 / 2e-15 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04760 67 / 6e-15 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G33110 63 / 3e-13 ATVAMP723 vesicle-associated membrane protein 723 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000504 [exp] 129 / 6e-38 AT4G15780 293 / 3e-100 vesicle-associated membrane protein 724 (.1) Lus10038166 [exp] 72 / 1e-16 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 71 / 3e-16 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 70 / 9e-16 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 69 / 2e-15 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 65 / 8e-14 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 64 / 1e-13 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 64 / 1e-13 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 64 / 2e-13 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G209100 [exp] 93 / 1e-24 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.003G177700 [exp] 71 / 3e-16 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 69 / 1e-15 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 65 / 6e-14 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 63 / 3e-13 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 62 / 6e-13 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.010G239900 [exp] 39 / 0.0002 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037511 pacid=23167182 polypeptide=Lus10037511 locus=Lus10037511.g ID=Lus10037511.BGIv1.0 annot-version=v1.0 ATGCAATGGAAGCTGTTGAACTTGGATAACTTACCACATGAATCAGAATGCTGTGTTAGCTTCATTGGTTTACTACCTGCAAATCCAGATGTGGTAATCC TTGACTTTGATCAATCCTTTATGGCGGTTGGGATTGGGATTTTAGAAGCTTACCGTAATTTTGTTGTGTTGCATGCAGCTTATTGTGTAGTTGCCAAGGA TACTCTAAGCAAGCAGATCTCTATTGCATTTTTGGAACGTATGAAGGCAGACTTTAGGAAAAGATATGGAGGTGGTAAAGCTGACACGGCTATCCCCAAA AGTCTCAATAAGGAATTTGGGTAG
AA sequence Show only first row Show all	>Lus10037511 pacid=23167182 polypeptide=Lus10037511 locus=Lus10037511.g ID=Lus10037511.BGIv1.0 annot-version=v1.0 MQWKLLNLDNLPHESECCVSFIGLLPANPDVVILDFDQSFMAVGIGILEAYRNFVVLHAAYCVVAKDTLSKQISIAFLERMKADFRKRYGGGKADTAIPK SLNKEFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10037511 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	10.9	0.6027
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	13.9	0.5979
					Lus10027385 [exp]	14.7	0.6616
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	27.8	0.6007
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	33.1	0.5709
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10025982 [exp]	37.0	0.5466
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10016500 [exp]	37.4	0.5252
					Lus10039427 [exp]	56.6	0.5258
					Lus10027118 [exp]	76.9	0.5300
					Lus10033844 [exp]	80.7	0.5375

Compare expression of checked genes

Lus10037511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.