Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47770 87 / 2e-21 ATTSPO TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000500 [exp] 302 / 2e-106 AT2G47770 86 / 5e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10010281 [exp] 58 / 1e-10 AT2G47770 126 / 6e-37 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025200 [exp] 122 / 3e-35 AT2G47770 111 / 6e-31 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.002G206100 [exp] 90 / 1e-22 AT2G47770 179 / 3e-57 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.014G131400 [exp] 88 / 9e-22 AT2G47770 156 / 3e-48 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03073 [flax] [poplar] TspO_MBR TspO/MBR family
Representative CDS sequence Show only first row Show all	>Lus10037513 pacid=23167278 polypeptide=Lus10037513 locus=Lus10037513.g ID=Lus10037513.BGIv1.0 annot-version=v1.0 ATGGCGAGTCATCATCACGGCAGGAAGTCCACCGTCCACCGCGGGCGATCCACATGTCTTCCACCTTGGGCGATCGTGTTGTTTCCTCTGCTCATAACCG CCGCATCCATCCACTCTTTCGGCTCGAGCAGGAAGTTCGAAGCGCTGCCCAAATCGGCCTGGTTCCCTCCATTGTGGCTTATTCACTTCGGGTCGCTGTG TTCGACTGCGCTCATGAGCCTGGCGGCTCTGACGGTTCATGCTAAGCGTGGATTGAGCGGCGACGATTTGCATCTCTACTGCTGCCAGGTTGGGTTGAGC GTTCTATGGTGCCCGCTGGTGGTTAGGATCGGCGCCGGTTTGGTCGGTTCGGCATACACTTGCGTTCACATCGGGTCGTTGTTGGGCTGCTTATGGGTAT TCGGGAAGGAAAGCCCGTCTACGAGGAAGTTAGTTGGGCCTTGTTTGGGCTGGGCTGTGTTTCTCGCGGTGTGTACGTTTAAGCTAGTTCGTGATTCGGA GATCTCAACTGTAGTGGATTTGGCTAAGTTGTTTGGCGGCCTTCTCGCTGGATGA
AA sequence Show only first row Show all	>Lus10037513 pacid=23167278 polypeptide=Lus10037513 locus=Lus10037513.g ID=Lus10037513.BGIv1.0 annot-version=v1.0 MASHHHGRKSTVHRGRSTCLPPWAIVLFPLLITAASIHSFGSSRKFEALPKSAWFPPLWLIHFGSLCSTALMSLAALTVHAKRGLSGDDLHLYCCQVGLS VLWCPLVVRIGAGLVGSAYTCVHIGSLLGCLWVFGKESPSTRKLVGPCLGWAVFLAVCTFKLVRDSEISTVVDLAKLFGGLLAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	0	1
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	7.3	0.6681
AT3G46570			Glycosyl hydrolase superfamily...		Lus10000070 [exp]	9.2	0.6877
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	11.5	0.6589
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10040832 [exp]	13.4	0.5423
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	18.3	0.5793
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	22.5	0.5894
AT5G58820			Subtilisin-like serine endopep...		Lus10002245 [exp]	25.2	0.5613
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	33.2	0.5850
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	46.3	0.5342
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	51.6	0.5022

Compare expression of checked genes

Lus10037513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.