Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62720 614 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 609 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT1G74380 423 / 2e-146 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 422 / 5e-146 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 392 / 3e-133 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 256 / 3e-81 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 251 / 1e-79 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 108 / 2e-28 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037516 [exp] 754 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 751 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 742 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10019076 [exp] 424 / 3e-147 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 422 / 3e-146 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 420 / 7e-145 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 413 / 5e-142 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 278 / 1e-92 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 275 / 2e-88 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208000 [exp] 637 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 637 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 567 / 0 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.015G061800 [exp] 424 / 1e-146 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 418 / 2e-144 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 263 / 1e-83 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 255 / 1e-80 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10037514 pacid=23167155 polypeptide=Lus10037514 locus=Lus10037514.g ID=Lus10037514.BGIv1.0 annot-version=v1.0 ATGCTAGAACGGTGCCTCGGCCCTCAGCGGGTCCGCCGGATCGAAAGAGCTGCCCGGCAAGCCAAAGTCACCGTCCTATGCCTATTCATGACCGTCCTCG TCCTACGTGGCTTGTTCGGCGCCGGAAAGTACGGAACTCCGGCCCAGGACATCGAGGATCTGACGAGCCACTTCTACGCTTCACGGAAACACGCCGAGCC TCACCGCGTGCTCGTCGAGGCGCAGCCGGAGAACGAGGCCAAGACCGAAGACCCGAAGAATTACGCTACGTTCGACGTCAGCAAGATTATGGTGGACGAA GGCGAGGACGAGAAGCCCGATCCCAACAAGCCGTACACCTTGGGTCCTAAGATTTCCGATTGGGACGATCAGCGAGCCGATTGGCTGAGAAAGAACCCTT ATTTCCCCAATTTCATCAGAGAGAACAAGCCCCGGGTGCTCCTGGTCACCGGATCTGCTCCCAAGCCGTGCGAGAATCCTGTTGGTGACCATTACTTGTT GAAAGCGATCAAGAACAAGATCGATTACTGCAGGCTTCACGGGATCGAGATCTTCTACAACATGGCACTGCTGGATGCGGAAATGGCCGGTTTCTGGGCG AAGCTGCCGTTGATTAGGAAGCTGCTGCTGTCTCATCCGGAGATTGAGTTCCTTTGGTGGATGGACAGTGATGCCATGTTTACAGATATGGCATTTGAGT TGCCTTGGGAGAGGTATAAGGACGTCAATCTGGTGATGCACGGTTGGAACGAGATGGTTTACGATCAGAAGAACTGGATTGGGCTGAACACTGGAAGCTT TCTGCTGAGGAACGGCCAATGGGCATTGGATCTTCTGGACGCGTGGGCGCCAATGGGACCGAAAGGGAAGATTAGAGATGAAGCTGGGCAAGTACTCACT CGGGAGCTGAAAGACAGACCTGTTTTCGAAGCGGACGATCAATCGGCCATGGTTTATCTATTGGCCACACAGAGAGAAATGTGGGGGGAGAAGGTGTATC TAGAGAGCGCTTACTATTTGCACGGTTACTGGGGGATATTGGTGGACCGGTATGAGGAAATGATCGAGAATTATCAGCCGGGACTGGGCGATAATCAAAG CTGTCAAAGTATCGTCTTGAAGACGATGATCTCTGCATGCCATTTCATACTGTTAGGTAATGTGATGTATTGCCACACTCAAATGACATTAATCTATGGA AACCGAGTCTGA
AA sequence Show only first row Show all	>Lus10037514 pacid=23167155 polypeptide=Lus10037514 locus=Lus10037514.g ID=Lus10037514.BGIv1.0 annot-version=v1.0 MLERCLGPQRVRRIERAARQAKVTVLCLFMTVLVLRGLFGAGKYGTPAQDIEDLTSHFYASRKHAEPHRVLVEAQPENEAKTEDPKNYATFDVSKIMVDE GEDEKPDPNKPYTLGPKISDWDDQRADWLRKNPYFPNFIRENKPRVLLVTGSAPKPCENPVGDHYLLKAIKNKIDYCRLHGIEIFYNMALLDAEMAGFWA KLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAFELPWERYKDVNLVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDLLDAWAPMGPKGKIRDEAGQVLT RELKDRPVFEADDQSAMVYLLATQREMWGEKVYLESAYYLHGYWGILVDRYEEMIENYQPGLGDNQSCQSIVLKTMISACHFILLGNVMYCHTQMTLIYG NRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037514 [exp]	0	1
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	3.2	0.9174
AT1G75140			unknown protein		Lus10007163 [exp]	4.2	0.8759
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	4.9	0.8875
AT1G52420			UDP-Glycosyltransferase superf...		Lus10011469 [exp]	5.0	0.8583
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	6.7	0.8820
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	6.8	0.8916
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	11.0	0.8829
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	11.6	0.8706
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	14.0	0.8724
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	14.8	0.8737

Compare expression of checked genes

Lus10037514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.