Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79490 1253 / 0 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 176 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 166 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 155 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 137 / 2e-33 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 137 / 5e-33 GUN1 genomes uncoupled 1 (.1) AT2G02150 135 / 1e-32 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 134 / 2e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 134 / 6e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 133 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002871 [exp] 1618 / 0 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037517 [exp] 1584 / 0 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 174 / 5e-45 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10003424 [exp] 148 / 2e-36 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 142 / 1e-34 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 138 / 4e-34 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026884 [exp] 137 / 4e-33 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013841 [exp] 135 / 2e-32 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 134 / 8e-32 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173400 [exp] 1316 / 0 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G066400 [exp] 173 / 1e-44 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.006G264800 [exp] 148 / 2e-36 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G180000 [exp] 146 / 2e-36 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G014100 [exp] 147 / 3e-36 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 144 / 5e-36 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 136 / 5e-33 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 135 / 2e-32 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G203100 [exp] 134 / 2e-32 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G250700 [exp] 134 / 5e-32 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037515 pacid=23167104 polypeptide=Lus10037515 locus=Lus10037515.g ID=Lus10037515.BGIv1.0 annot-version=v1.0 ATGAAGCGAGTTGGGGTTTCGGTTTCAATGTTTCATCGCAGCCGATTCTACCATCAGGCCCCTAATCTCCATTCTTTTTCCTACGACCGGTGTCTCACTT CTATTTCCCGACTTCTGTTTCACAATCTTGTCCCTCATCCTGCATCATCAGCTGCAACTATCCGAGACTCCAACTTCGCGAGGAAGTTCTGTTCAGGGGC GAGAAGCAAAGGTACATGGACGGAGGAGGAAATAGAGTATTTGGATGAGTCCGGCAGTGTCATTTATTCCGGTAAAGGAGTGAGATCAGTGGAACCTGGA CTAGATGACCATGTCATGATTGGTGATCTTAAAAAGCCTATCCTAAACGCTTCTGCGGTTGCCAAGATGGTTGAAGTTGCAAAGAGATGGAGATGGGGTC CTGAACTAGAAACTCAACTGGACAGTCTGCAATTCGTTCCCAACATGACGCATGTTGTGCAGGCTATGAAACTCATTGATGATTGTGGTGCGTTGTTGAG TTTGTTTAAATGGTCCAAGAGGCAGTCATGGTATTCTCCCAGCGATGAGTGTTACGTCATCTTGTTCGATGGGCTTAATCGAAGCAGAGATTTTGATGGC ATTCAGAGTTTGTTCGATGATATGGTTCAAGATTCAAGTAAGAAGACTAATTCGTTCGGGGCGCACAATAGAGTAATCCAGTATTTGGCCAAGGCAGAGA AGCTGGAAGTGTCCTTCTCTTGTTTCAAGAAAATTCATGATTCGGGATGTGAGATCGATACACAGACTTATAACGTGCTTATTACATTGTTTCTGAACAA GGGTTTGCCTTACAAGGCTTTTGAGATATATGAGAGCATGGAAGCAGCGAATGCTTCATTGGATAGGTCAACCTACGAGATGATGGTACCAAGCTTGGCA AAATCAGGGAGGCTTGATGCAGCTTATCAGCTCTATCAACATATGAAGGAAAAGAAAATCCAACCAAGCTTTGGGATCTTCTCCGCGCTTGTTGCTTCCA TGGGGAAAGCTGGTAGGCTAGACACATCCTTGAAAATTTACATGGAAATGCAAGGTTTTGGACTCAGGCCATCTGCCACCATGTATGTTTCCTTGGTAGA ATCATACACCAAGGCCGGGAAGCTAGATAAAGCACTGAGGCTGTGGGATGAGATGAAGTTGACTGGCTTTAGGCCTAACTTTGGCTTGTATACATTAATT ATTGAATCCCACGCAAAGTCCGGGAAGCTCGACATTGCAATGTCCATCTTCAGCGATATGGAAAAGGCTGGATTTTTACCAACCCCATCAACCTATTCGT GTCTTCTGGAGATGCATGCTGCTTCTGGACAAGTCGACTCTGCTATGAAGCTGTATCACTCCATGACTAGTGCGGGTTTGAAACCAGGTTTAAGTACCTA TACTTCCCTTTTGACCCTTTTAGCTAATAAAAGGCTTGTAGATGTAGCTGCCAAAATCTTACTGGAAATGAAGACGATGGGCTTTTCCGTTGATGTTAGT GCCAGTGACGTTCTAATGGTGTATATACGAGATGGTTCGGTTGATCTCGCTCTGAGGTGGTTACGTTTCATGGGTTCATCCGGGGTTCGAACAAATAACT TCATAATTAGGCAGCTGTTTGAGTCATGCATGAAGAATGGCTTGTATGAGCAGGCCAAGCCTCTTTTAGAAACTTACATAAACTCTGCAGCTAAAGTTGA TTTGATACTCTATACTTCCATACTGGCCCATCTTGTAAGGTGCCAAGACGAGTATAAAGAGAGGCACTTGATGTCAATCCTAGGTAGCACAAGGCATAAG GCGCATGAGTTTTTGTGCGGGCTTTTCACCGGTCCGGAGCAGAGGGAACAGCCCGTGCTGTCTTTTGTGAGGGAGTTCTTCCAGGGAATAGATTATGAGT TGGAGGAAGGAGCTGCAAGGTACTTTGTGAATGTTCTTCTGAATTATTTAGTTCTAATGGGACAAATAAACAGGGCAAGATGTGTGTGGAAAGTGTCGTA CGAGAACAAGTTGTTCCCTAAGGCGATTGTGTTTGATCAACATATTGCTTGGTCCCTTGATGTGAGGAATCTTTCGGTGGGGGCTGCTCTGATTGCAGTA GTGCACACGCTTCATAGGTTCAGAAAGAGGATGTTGTACTATGGGGTGATACCGAGACGGATAAAATTGGTGACAGGGCCAACGCTGAAGATTGTAGTGG CGCAGATGCTTAGTGGGTTGGAGTCTCCGTTTGAGGTGAGTAAAGTGGTGCTGAGAGCGCCGGGGGAAGGGGTTATGGAGTGGTTTAAGAAGCCTATTGT ACAGCAGTTTCTAGTGAACGAGATTCCATCAAGTGCTGACATACTAATGCATAAACTCAACATACTTTTCCCGAGTTCTGCACCTGAGATCAGATCGCTC TCTCCTCCCAAGCCACTTATGTCTGTTGCTATGGGGAAGACTATGTAA
AA sequence Show only first row Show all	>Lus10037515 pacid=23167104 polypeptide=Lus10037515 locus=Lus10037515.g ID=Lus10037515.BGIv1.0 annot-version=v1.0 MKRVGVSVSMFHRSRFYHQAPNLHSFSYDRCLTSISRLLFHNLVPHPASSAATIRDSNFARKFCSGARSKGTWTEEEIEYLDESGSVIYSGKGVRSVEPG LDDHVMIGDLKKPILNASAVAKMVEVAKRWRWGPELETQLDSLQFVPNMTHVVQAMKLIDDCGALLSLFKWSKRQSWYSPSDECYVILFDGLNRSRDFDG IQSLFDDMVQDSSKKTNSFGAHNRVIQYLAKAEKLEVSFSCFKKIHDSGCEIDTQTYNVLITLFLNKGLPYKAFEIYESMEAANASLDRSTYEMMVPSLA KSGRLDAAYQLYQHMKEKKIQPSFGIFSALVASMGKAGRLDTSLKIYMEMQGFGLRPSATMYVSLVESYTKAGKLDKALRLWDEMKLTGFRPNFGLYTLI IESHAKSGKLDIAMSIFSDMEKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYHSMTSAGLKPGLSTYTSLLTLLANKRLVDVAAKILLEMKTMGFSVDVS ASDVLMVYIRDGSVDLALRWLRFMGSSGVRTNNFIIRQLFESCMKNGLYEQAKPLLETYINSAAKVDLILYTSILAHLVRCQDEYKERHLMSILGSTRHK AHEFLCGLFTGPEQREQPVLSFVREFFQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVSYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAV VHTLHRFRKRMLYYGVIPRRIKLVTGPTLKIVVAQMLSGLESPFEVSKVVLRAPGEGVMEWFKKPIVQQFLVNEIPSSADILMHKLNILFPSSAPEIRSL SPPKPLMSVAMGKTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	0	1
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	2.6	0.9066
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	3.9	0.8933
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10037812 [exp]	4.9	0.9024
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	6.0	0.8943
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	7.0	0.8880
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	8.0	0.9045
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	8.5	0.8873
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	8.9	0.8873
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	12.0	0.8695
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	13.3	0.8816

Compare expression of checked genes

Lus10037515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.