Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02500 785 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 770 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 537 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 532 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 505 / 5e-177 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 291 / 5e-94 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 287 / 1e-92 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 107 / 4e-28 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037519 [exp] 933 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 927 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 755 / 0 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10019076 [exp] 538 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 535 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 534 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 528 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 465 / 2e-165 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 310 / 3e-101 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208000 [exp] 814 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 810 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 675 / 0 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.015G061800 [exp] 541 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 536 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 297 / 3e-96 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 289 / 5e-93 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 69 / 3e-14 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10037516 pacid=23167003 polypeptide=Lus10037516 locus=Lus10037516.g ID=Lus10037516.BGIv1.0 annot-version=v1.0 ATGCTAGAACGGTGCCTCGGCCCTCAGCGGGTCCGCCGGATCGAAAGAGCTGCCCGGCAAGCCAAAGTCACCGTCCTATGCCTATTCATGACCGTCCTCG TCCTACGTGGCTTGTTCGGGGCCGGAAAGTACGGAACTCCGGCCCAGGACATCGAGGATCTGACGAGCCACTTCTACGCTTCACGGAAACACGCCGAGCC TCACCGCGTGCTCGTCGAGGCGCAGCCGGAGAACGAGGCCAAGACCGAAGACCCGAAGAATTACGCTACGTTCGACGTCAGCAAGATTATGGTGGACGAA GGCGAGGACGAGAAGCCCGATCCCAACAAGCCGTACACCTTGGGTCCTAAGATTTCCGATTGGGACGATCAGCGAGCCGATTGGCTGAGAAAGAACCCTT ATTTCCCCAATTTCATCAGAGAGAACAAGCCCCGGGTGCTCCTGGTCACCGGATCTGCTCCCAAGCCGTGCGAGAATCCTGTTGGTGACCATTACTTGTT GAAAGCGATCAAGAACAAGATCGATTACTGCAGGCTTCACGGGATCGAGATCTTCTACAACATGGCACTGCTGGATGCGGAAATGGCCGGTTTCTGGGCG AAGCTGCCGTTGATTAGGAAGCTGCTGCTGTCTCATCCGGAGATTGAGTTCCTTTGGTGGATGGACCGTGATGCCATGTTTACAGATATGGCATTTGAGT TGCCTTGGGAGAGGTATAAGGACGTCAACCTGGTGATGCACGGTTGGAACGAGATGGTTTATGATCAAAAGAACTGGATTGGGCTAAACACTGGAAGCTT TCTGCTGAGGAACGGCCAATGGGCATTGGATCTTCTGGACGCGTGGGCGCCAATGGGACCGAAAGGGAAGATTAGAGATGAAGCTGGGCAAGTACTCACT CGGGAGCTGAAAGACAGACCTGTTTTCGAAGCGGATGATCAATCGGCCATGGTTTATCTATTGGCCACACAGAGAGAAATGTGGGGGGAGAAGGTGTATC TAGAGAGCGCTTACTATTTGCACGGTTACTGGGGGATATTGGTGGATCGGTATGAGGAAATGATCGAGAATTATCATCCGGGATTAGGAGATCATCGATG GCCGTTGGTTACTCACTTCGTGGGTTGCAAGCCTTGCGGGAAGTTCGGTGATTACCCAGTGGAAAGATGCTTGAAGCAAATGGATCGAGCTTTCAACTTC GGTGACAATCAAATTCTGCAGATTTATGGGTTCACACACAAAACTTTGGCTAGTAGGAGAGTTAAGCGGGTTAGAAACGAGACTAGCAATCCACTGGAAG CTAAAGACGAGCTTGGGTTGCTTCATCCTGCTTTCAAAGCTGTCAAAGTATCGTCTTGA
AA sequence Show only first row Show all	>Lus10037516 pacid=23167003 polypeptide=Lus10037516 locus=Lus10037516.g ID=Lus10037516.BGIv1.0 annot-version=v1.0 MLERCLGPQRVRRIERAARQAKVTVLCLFMTVLVLRGLFGAGKYGTPAQDIEDLTSHFYASRKHAEPHRVLVEAQPENEAKTEDPKNYATFDVSKIMVDE GEDEKPDPNKPYTLGPKISDWDDQRADWLRKNPYFPNFIRENKPRVLLVTGSAPKPCENPVGDHYLLKAIKNKIDYCRLHGIEIFYNMALLDAEMAGFWA KLPLIRKLLLSHPEIEFLWWMDRDAMFTDMAFELPWERYKDVNLVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDLLDAWAPMGPKGKIRDEAGQVLT RELKDRPVFEADDQSAMVYLLATQREMWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNF GDNQILQIYGFTHKTLASRRVKRVRNETSNPLEAKDELGLLHPAFKAVKVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	1.4	0.9355
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	2.4	0.9186
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	5.2	0.8949
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	5.5	0.9087
AT1G66080			unknown protein		Lus10031356 [exp]	6.9	0.9037
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	7.3	0.8459
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	7.7	0.9025
					Lus10007581 [exp]	8.7	0.8767
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	10.2	0.8954
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	10.7	0.9009

Compare expression of checked genes

Lus10037516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.