Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22260 204 / 4e-64 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002872 [exp] 362 / 5e-124 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021800 [exp] 204 / 1e-63 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 183 / 1e-55 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF01786 [flax] [poplar] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Lus10037518 pacid=23166993 polypeptide=Lus10037518 locus=Lus10037518.g ID=Lus10037518.BGIv1.0 annot-version=v1.0 ATGGCAGTGTCTGCTTGTTCTGCTGCGACCCTCCCAGCAATTATCAAAGCCTCTAGTTCTCTCAACACCCGAAATAACTCTTTGCGTTACAACCTCCATA GTCTAGCTTCACGCCGCCCATCTCTTTCAAGGAAATTTTATAAAACTCAAGCAACTGTGGTTCGTGAACCGGAGGAAAAAGTGGTGGTAGAGCAAACCTT TCAACCCAAGACTACCTTTGATCAGCAGGAAAGCCGTGGCAGTGGCGGCTCAGTGAAGGACCCTCCTCAATCTGCTTTTGACCAATCGATTATCAAGATT GAGCAATCCATTAATGTCTTTCTTACGGATACAGTGATAAAGATTCTCGACACATTCTACCACGATCGAGATTATGCTAGGTTCTATGTTCTTGAAACCA TTGCAAGGGAACTTGGTGGTAACAGTTGGTGGTTTGACCGATTCCTTGCTCAACATGTTGCAGTATTTTACTATTTCATGACTGTGTTTATGTATGCACT GAGTCCAAGAATGGCGTATGAGCTAAAGCAATTACCTGCTCCTGAGATTGCAGTGAGATACTACACTGGGGATGACTTGTACTTATTTGATACATTATAC GACACGTTTGTGAATATTAGAGAAGATGAGGGTGAACACTGCAAGACTATGAAAGCATGTCAAACTCCTGGTAACCTGCGTTCCCCGCATTCATATCCAG ATGAAGCTGCCGATGACGACGAATCGTCTTCAGGATGCGCGGTCTCTGAAGAAGCAGAGTGCCAAGGCATTGTTGACTGCTTAAAGAAATCTGTTAGCCC TGGTGTTGTAACAAAGCAACAAAAGCAACGAGTTTAA
AA sequence Show only first row Show all	>Lus10037518 pacid=23166993 polypeptide=Lus10037518 locus=Lus10037518.g ID=Lus10037518.BGIv1.0 annot-version=v1.0 MAVSACSAATLPAIIKASSSLNTRNNSLRYNLHSLASRRPSLSRKFYKTQATVVREPEEKVVVEQTFQPKTTFDQQESRGSGGSVKDPPQSAFDQSIIKI EQSINVFLTDTVIKILDTFYHDRDYARFYVLETIARELGGNSWWFDRFLAQHVAVFYYFMTVFMYALSPRMAYELKQLPAPEIAVRYYTGDDLYLFDTLY DTFVNIREDEGEHCKTMKACQTPGNLRSPHSYPDEAADDDESSSGCAVSEEAECQGIVDCLKKSVSPGVVTKQQKQRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	2.2	0.8912
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	4.2	0.8441
AT5G19540			unknown protein		Lus10023641 [exp]	6.3	0.8424
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	6.6	0.8336
AT3G19900			unknown protein		Lus10034203 [exp]	7.5	0.8724
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	11.7	0.8249
AT3G19900			unknown protein		Lus10029066 [exp]	14.3	0.8542
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	14.9	0.8323
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10039800 [exp]	15.3	0.8607
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	17.0	0.7814

Compare expression of checked genes

Lus10037518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.